View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_47 (Length: 202)
Name: NF19240_low_47
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 32632703 - 32632529
Alignment:
| Q |
1 |
cacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattcttgccatctttctagtg |
100 |
Q |
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| T |
32632703 |
cacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgaggagtggtataacagagaaaagcataattcttgccatctttctagtg |
32632604 |
T |
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| Q |
101 |
tctacatccatagtaataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaa |
176 |
Q |
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| T |
32632603 |
tctacatccatagtaataccataacctatgataaattcaat-aaaaaagtacacattaatgattcacatcaaacaa |
32632529 |
T |
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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32614016 - 32613881
Alignment:
| Q |
1 |
cacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattcttgccatctttctagtg |
100 |
Q |
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||||||| |||||||||||||||| | |||||| || ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
32614016 |
cacattgcgtaatgttgtagagaaatagaacaaagtgggaatctgcatgatgaggagtggtataacagagaaaaccatgattctcgccatctttctagtg |
32613917 |
T |
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| Q |
101 |
tctacatccatagtaataccataacctatgataaat |
136 |
Q |
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| T |
32613916 |
tctatatccatagtaatgccataacctatcataaat |
32613881 |
T |
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