View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_5 (Length: 511)
Name: NF19240_low_5
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 15885946 - 15885466
Alignment:
| Q |
18 |
acaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatccatttgttctattgatgagagaaactcatttccatcataa |
117 |
Q |
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| T |
15885946 |
acaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatccatt-gttctattgatgagaaaaactcatttccatcataa |
15885848 |
T |
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| Q |
118 |
cccctttgagataattcaagtcaattatgtcctatgtcttgctaatatcaagcttcaaaacaacatcgccatattttcctctaacttttacatagagcaa |
217 |
Q |
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| T |
15885847 |
cccctttgagataattcaagtcaattatgtccgatgtcttgctaatatcaagcttcaaaacaacatcgccatattttcctctaacttttacatagagcaa |
15885748 |
T |
|
| Q |
218 |
taggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatgtcaaaagcca |
317 |
Q |
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| T |
15885747 |
taggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttttcatgttgacggttgatgggaaaatacatgtcaaaagcca |
15885648 |
T |
|
| Q |
318 |
accacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatcttggatcgaatccatcctgtccaaggcatttatctggtttc |
417 |
Q |
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| T |
15885647 |
accacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatcttggatcgaatccatcctgtccaaggcatttatctggtttc |
15885548 |
T |
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| Q |
418 |
atagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgttgtaactttaatattttacctt |
499 |
Q |
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| T |
15885547 |
atagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgttgtaactttaatattttacctt |
15885466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 208 - 341
Target Start/End: Complemental strand, 28959059 - 28958926
Alignment:
| Q |
208 |
catagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatg |
307 |
Q |
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| T |
28959059 |
catagagcaataggtcactaatctttcatagaaactttggactcacctttttggattagggatatgtttgtcatatttaaggttgatgggaaagtaaatg |
28958960 |
T |
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| Q |
308 |
tcaaaagccaaccacaccattgattacaaatttc |
341 |
Q |
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| T |
28958959 |
ttgaaagccaaccgcaatattgattaaaaatttc |
28958926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 8942357 - 8942306
Alignment:
| Q |
57 |
gtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
108 |
Q |
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| T |
8942357 |
gtttctacacacatcatgatccacttgatctattgatgagataaactcattt |
8942306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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