View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_8 (Length: 456)
Name: NF19240_low_8
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 29 - 437
Target Start/End: Original strand, 47558228 - 47558635
Alignment:
| Q |
29 |
taagttcggattatataatttgaattgtgctgacccaaagatcgaacttgtttgttacagggataaccaatttaagaatcatgctaatcattctatctca |
128 |
Q |
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| T |
47558228 |
taagttcggattatataatctgaattgtgctgacccaaagatcgaacttgttcgttacagggataaccaatttaagaatcatgctaatcattctatctca |
47558327 |
T |
|
| Q |
129 |
ttgctttcatgtgtttcttgtgttttaaggctcggaactagtggaagatcttcaaaggagcccatgggtgccatgacacccctcatatagtttatatata |
228 |
Q |
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| T |
47558328 |
ttgctttcatgtgtttcttgtgttttaaggctcggaactagaggaagatcttcaaaggagcccatgggtgccatgacacctctcatatagtttatatata |
47558427 |
T |
|
| Q |
229 |
ctatattaaccgtacaat-ttataagatttgtatatgtcgcaacgaaaactgaacaattttgaaatataagttcagttcaagtccttgtgtctcctcttg |
327 |
Q |
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|| | |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
47558428 |
cttttttaagcgtacaatgttataagatttgtatacgtcgcaacgaaaactgaacaattttggaatataagttcagttcaagtccttgtgtctcttcttg |
47558527 |
T |
|
| Q |
328 |
ctgtattcgtttttatatttttattcacaaaaaagattttttagggactagaaccttcgtccataggttagcattcaagcaaaatgaacggccactactc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||| | ||| |
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| T |
47558528 |
ctgtattcgtttttatatttttattcacaaaaaagattttgtagggactagaacctacgccc--aggttagcattcaagcaaaatgaacggccattgctc |
47558625 |
T |
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| Q |
428 |
atggcttact |
437 |
Q |
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| T |
47558626 |
atggcttact |
47558635 |
T |
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