View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19241_high_1 (Length: 492)
Name: NF19241_high_1
Description: NF19241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19241_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 50 - 475
Target Start/End: Complemental strand, 30310204 - 30309778
Alignment:
| Q |
50 |
ataaagggtaaagataaaagggttgtaaccaaaaaaggaaagaaaagggtagagaatattctattttctgactttgttctttttctttggaaaggttcat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30310204 |
ataaagggtaaagataaaagggttgtaaccaaaaaaggaaaaaaaagggtagagaatattctattttctgactttgttctttttctttggaaaggttcat |
30310105 |
T |
|
| Q |
150 |
gaacgttatgttacaaggctaaggaagaagttgcagtttgaagagaggaaacagtctaatcaaagaagggtaatgattctgcttgttatttgattttatg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30310104 |
gaacgttatgttacaaggctaaggaagaagttgcagtttgaagagaggaaacagtctaatcaaagaagggtaatgattctgcttgttatttgattttatg |
30310005 |
T |
|
| Q |
250 |
gatgttttagtttgatgggggaagtaataaggttgtagtaaatgaactgtggtgaatgaagaaaaattaacttatatctgaaacaaattcttctcaaagg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30310004 |
gatgttttagtttgatgggggaagtaataaggttgtagtaaatgaactgtggtgaatgaagaaaaattaacttatatctgaaacaaattcttctcaaagg |
30309905 |
T |
|
| Q |
350 |
ataaact-ttttattttacttttgaaatagaatctgagcttgagtgaagatatgaagttaaaatccaaatgtgttaactgttaaccccttatcatatgtt |
448 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30309904 |
ataaacttttttattttacttttgaaatagaatctgagcttgagtgaagatatgaagttaaaatccaaatgtgttaactgttaaccccttatcatatgtt |
30309805 |
T |
|
| Q |
449 |
ttgaatggattattgcttggtgtatgt |
475 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30309804 |
ttgaatggattattgcttggtgtatgt |
30309778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University