View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19242_high_10 (Length: 422)
Name: NF19242_high_10
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 10604105 - 10604525
Alignment:
| Q |
1 |
ctggttcattattttatacttatgttcaaatgaaggaatcatcatcgttgtttgctagttgtaattctccattactatgtaattgtttatttatttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604105 |
ctggttcattattttatacttatgttcaaatgaaggaatcatcatcgttgtttgctagttgtaattctccattactatgtaattgtttatttatttgatc |
10604204 |
T |
|
| Q |
101 |
ttatactaaatgaaatggtcactggataaattaaagaattcttaactatgttgactttttcttcattgatgtaatggaataaaatgaggattgtaatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604205 |
ttatactaaatgaaatggtcactggataaattaaagaattcttaactatgttgactttttctccattgatgtaatggaataaaatgaggattgtaatctt |
10604304 |
T |
|
| Q |
201 |
tttattcagcatttgaaagtgtcatcttttaggttgatcatgggtgaaagaactctagtgttcctactcttccttttcagttatttgttagttgttgtag |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604305 |
tttattcagcatttgaaagtgtcat-ttttaggttgatcatgggtgaaagaactctagtgttcctactcttccttttcagttatttgttagttgttgtag |
10604403 |
T |
|
| Q |
301 |
taacaaaaacatcaaatgatgattgtaagcnnnnnnnnccaatgctatgctctatgttgaatgtttttccaatcattcatctacagatttcagcctataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10604404 |
taacaaaaacatcaaatgatgattgtaagcttttttttccaatgctatgctctatgttgaatgtttttccaatcattcatctacagatttcagcctataa |
10604503 |
T |
|
| Q |
401 |
catcatgaaatcagaaatattc |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10604504 |
catcatgaaatcagaaatattc |
10604525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University