View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_15 (Length: 388)
Name: NF19242_high_15
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 50047363 - 50047721
Alignment:
| Q |
23 |
gttctgagcaatcgtagcttaaccttattgtgttttcttcctttaacttccactaggaagacataaaactatgttgatgttagtgttatagaattcaatg |
122 |
Q |
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| T |
50047363 |
gttctgagcaatcgtagcttaaccttattgtgttttcttcctttaacttccactaggaagacataaaactatgttgatgttagtgttatagaattcaatg |
50047462 |
T |
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| Q |
123 |
ctaagtcaagggttaaactaccatgaaaaatcttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgat |
222 |
Q |
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| T |
50047463 |
ctaagtcaagggttaaactaccatgaaaaatcttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgat |
50047562 |
T |
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| Q |
223 |
aatatatgcagtgagtccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggta |
322 |
Q |
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| T |
50047563 |
aatatatgcagtgagtccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggta |
50047662 |
T |
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| Q |
323 |
agggttacaatagaccaatacatggagtaagtgtaacccgatccgacactcctatgctt |
381 |
Q |
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| T |
50047663 |
agggttacaatagaccaatacatggagtaagtgtaacccgatccgacactcctatgctt |
50047721 |
T |
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