View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_16 (Length: 375)
Name: NF19242_high_16
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 27399670 - 27400025
Alignment:
| Q |
5 |
ttgtaatgtgaggttcttaagtttgtaggacattaaaaatttgtaatatataacaatgtatatgaaaccagataatttgtacgtcgcattccttgaatag |
104 |
Q |
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| T |
27399670 |
ttgtaatgtgaggttcttaagtttgtaggacattaaaaatttgtaatatataagaatgtatatgaaaccagataatttgtacgtcgcattccttgaatag |
27399769 |
T |
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| Q |
105 |
actcttcatgttctgtgaataagattaattggagaaagatcaatttagaatctatatcaatcaatcatgacccacaannnnnnnnnaccaaaatgtggtg |
204 |
Q |
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| T |
27399770 |
actcttcatgttctgtgaataagattaattggagaaagatcaatttagaatctgtatcaatcaatcatggcccacaatttttttttaccaaaatgtggtg |
27399869 |
T |
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| Q |
205 |
ttgagatgatcaaatcaaagaaaggatgttcttttaagttgattgtgacttaacctttatttttgcacatgaaggccatgttactcttgcctccgaaatc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27399870 |
ttgagatgatcaaatcaaagaaaggatgttcttttaagttgattgtgacttaacctttatttttgcacatgaaggccatgttactcttgcctccgaaatc |
27399969 |
T |
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| Q |
305 |
catctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattc |
360 |
Q |
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| T |
27399970 |
catctgttaagattagatcattccaacaacttgaaaatgcttatgtttgaacattc |
27400025 |
T |
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