View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19242_high_25 (Length: 320)

Name: NF19242_high_25
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19242_high_25
NF19242_high_25
[»] chr5 (4 HSPs)
chr5 (20-305)||(36130409-36130688)
chr5 (20-157)||(10523463-10523601)
chr5 (207-278)||(10523015-10523086)
chr5 (65-155)||(36130749-36130839)
[»] chr4 (1 HSPs)
chr4 (38-157)||(43224604-43224723)
[»] chr3 (5 HSPs)
chr3 (21-157)||(40542750-40542887)
chr3 (38-157)||(636554-636673)
chr3 (25-157)||(40542431-40542563)
chr3 (207-278)||(40542653-40542724)
chr3 (209-277)||(636764-636832)
[»] chr8 (2 HSPs)
chr8 (29-147)||(26024868-26024986)
chr8 (213-278)||(26025085-26025150)
[»] chr1 (1 HSPs)
chr1 (20-74)||(15256834-15256888)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 36130409 - 36130688
Alignment:
Q  20 gttcattttaaaatttcaattttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgag 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  36130409 gttcattttaaaatttcaattttctacctccgatagattactactgaatgttcatccggtaactcaaaccaatcgaactaccgatgtccacataagtgag 36130508  T
Q  120 ggaccaaaatgaatgatactttggtaattcaaagggctggtaaaagctaagaagcatactacattgttgctatacattcaatttcttcttctttggtcat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||      |||||||||||||    
T  36130509 ggaccaaaatgaatgatactttggtaattcaaagggctggtaaaagctaagaagcataatacattgttgctgtacattcaa------cttctttggtcat 36130602  T
Q  220 tatgcatcgatatcaatatgtaatggatatttataatcttctcatttactgaaccatggacatacgttttctagaactaaggttat 305  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  36130603 tatgcatcaatatcaatatgtaatagatatttataatcttctcatttactgaaccatggacataagttttctagaagtaaggttat 36130688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 10523601 - 10523463
Alignment:
Q  20 gttcattttaaaa-tttcaattttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtga 118  Q
    ||||||||||||| |||| |||||||||||  | || || |||||  | ||||||||   |||||||||||| ||||||||   ||||||||||||  ||    
T  10523601 gttcattttaaaaatttctattttctacctatggtaaataactaccagctgttcatctcataactcaaaccattcgaactacgaatgtccacatagacga 10523502  T
Q  119 gggaccaaaatgaatgatactttggtaattcaaagggct 157  Q
    |||||||||| |||||||| ||| ||||| |||||||||    
T  10523501 gggaccaaaaagaatgatatttttgtaatccaaagggct 10523463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 10523015 - 10523086
Alignment:
Q  207 cttctttggtcattatgcatcgatatcaatatgtaatggatatttataatcttctcatttactgaaccatgg 278  Q
    ||||||||||| ||||||||| |||||||||||  || ||||||||||||||| |||||| || ||||||||    
T  10523015 cttctttggtctttatgcatcaatatcaatatgcgatagatatttataatcttttcatttcctaaaccatgg 10523086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 36130839 - 36130749
Alignment:
Q  65 ggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgagggaccaaaatgaatgatactttggtaattcaaaggg 155  Q
    |||||||||||| |||||| ||| || |||| |||  |||||| ||||| ||||||| ||||||||| ||||| ||||||||  |||||||    
T  36130839 ggatgttcatcccgtaacttaaatcagtcgagctacagatgtctacatatgtgaggggccaaaatgattgatattttggtaacccaaaggg 36130749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 43224604 - 43224723
Alignment:
Q  38 attttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgagggaccaaaatgaatgata 137  Q
    |||||||||||||||||||| |||||  ||||||||||| ||||||||||  | ||||||||  |||||||||||||| ||||||||||||||| |||||    
T  43224604 attttctacctccgatagataactaccagatgttcatcctgtaactcaaaatattcgaactacagatgtccacataggcgagggaccaaaatgattgata 43224703  T
Q  138 ctttggtaattcaaagggct 157  Q
     |||||||||  ||||||||    
T  43224704 ttttggtaatctaaagggct 43224723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 40542887 - 40542750
Alignment:
Q  21 ttcattttaaaattt-caattttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgag 119  Q
    ||||||||||||||| | |||||||||||| | ||||| ||||| ||||||||| ||  |||| ||||||||||||||||   |||||||||||||  ||    
T  40542887 ttcattttaaaattttccattttctacctctggtagataactaccggatgttcaacctataacacaaaccaatcgaactacaaatgtccacataggcaag 40542788  T
Q  120 ggaccaaaatgaatgatactttggtaattcaaagggct 157  Q
    |||||||||| ||||||| ||||||||| |||||||||    
T  40542787 ggaccaaaataaatgatattttggtaatccaaagggct 40542750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 636554 - 636673
Alignment:
Q  38 attttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgagggaccaaaatgaatgata 137  Q
    ||||||||||| |  ||||| || || |||||||||||  ||||||||||||| ||||||||    |||||||||||| || ||||||||||||||| ||    
T  636554 attttctaccttcagtagataacgaccggatgttcatctcgtaactcaaaccagtcgaactacaattgtccacataggcgaaggaccaaaatgaatggta 636653  T
Q  138 ctttggtaattcaaagggct 157  Q
     ||||||||| |||||||||    
T  636654 ttttggtaatccaaagggct 636673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 40542431 - 40542563
Alignment:
Q  25 ttttaaaatttcaattttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgagggacc 124  Q
    |||||||||||  |||||||||||| | ||||| |||||   |||||||||| ||||||||||| | ||||||||   |||||||||||   ||||||||    
T  40542431 ttttaaaattttcattttctacctctggtagataactaccaaatgttcatcccgtaactcaaactagtcgaactacatatgtccacataaacgagggacc 40542530  T
Q  125 aaaatgaatgatactttggtaattcaaagggct 157  Q
    ||||||  ||||| ||| ||||| |||||||||    
T  40542531 aaaatgtctgatatttttgtaatccaaagggct 40542563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 40542724 - 40542653
Alignment:
Q  207 cttctttggtcattatgcatcgatatcaatatgtaatggatatttataatcttctcatttactgaaccatgg 278  Q
    ||||||||||||||||||||| ||||||||||| |||  |||||||||||||| | ||||| ||||||||||    
T  40542724 cttctttggtcattatgcatcaatatcaatatggaatatatatttataatcttattatttattgaaccatgg 40542653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 636832 - 636764
Alignment:
Q  209 tctttggtcattatgcatcgatatcaatatgtaatggatatttataatcttctcatttactgaaccatg 277  Q
    |||||||||||||  |||| ||||||||||||||| ||||||||||||||| |||| || | |||||||    
T  636832 tctttggtcattacacatcaatatcaatatgtaatagatatttataatcttatcatataatcaaccatg 636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 26024868 - 26024986
Alignment:
Q  29 aaaatttcaattttctacctccgatagattactactggatgttcatccggtaactcaaaccaatcgaactatcgatgtccacataggtgagggaccaaaa 128  Q
    |||||||  |||||||||||| | ||||| ||||| ||| |||||||| ||| ||||||| | | ||||||  |||||||||||||| ||| |||| |||    
T  26024868 aaaatttgcattttctacctctggtagataactaccggaagttcatcccgtagctcaaactagttgaactacggatgtccacataggcgagagaccgaaa 26024967  T
Q  129 tgaatgatactttggtaat 147  Q
    ||||||||| |||||||||    
T  26024968 tgaatgatattttggtaat 26024986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 26025150 - 26025085
Alignment:
Q  213 tggtcattatgcatcgatatcaatatgtaatggatatttataatcttctcatttactgaaccatgg 278  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| || ||||||||    
T  26025150 tggtcattattcatcaatatcaatatgtaatagatatttataatcttatcattttctaaaccatgg 26025085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 15256888 - 15256834
Alignment:
Q  20 gttcattttaaaatttcaattttctacctccgatagattactactggatgttcat 74  Q
    ||||||||||||||||| ||||| |||||||| ||||| || || ||||||||||    
T  15256888 gttcattttaaaatttccattttatacctccggtagataaccaccggatgttcat 15256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University