View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_30 (Length: 271)
Name: NF19242_high_30
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 31581390 - 31581149
Alignment:
| Q |
11 |
cagagatcattgaacctgagacgaaaaacacactctaagatctcaaattatcggtcaaccattgggtaaactccaaatcgattcacacttccattttatt |
110 |
Q |
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| T |
31581390 |
cagagatcattgaatttgaaacgaaaaacacactctaaaatctcaaattatcggtcaaccactaggtaaact---aatcgatttacactttcattttatt |
31581294 |
T |
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| Q |
111 |
cactttt-cacactcactctttcttttt-gtttaccgataactttccttcttaatttagactctaatctcagtttttccccggctcttttctttcatgtt |
208 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31581293 |
cactttttcacactcactctttctttttcgtttaccgataactttccttcttaatttagactctaatctcagtttttccccggctcttttctttcatgtt |
31581194 |
T |
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| Q |
209 |
tggagccaataataataaagtcagaagtcataacaatctatacat |
253 |
Q |
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| T |
31581193 |
tggagccaataataataaagtcagaagtcataacaatctatacat |
31581149 |
T |
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