View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_33 (Length: 254)
Name: NF19242_high_33
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_33 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 24213840 - 24214074
Alignment:
| Q |
20 |
gtctcttcatctgacgtcgttgtggatcccacatgcaatctttggtttcgtcttttccttccttcctcctccaccactgccaccacaaaatctttgcctg |
119 |
Q |
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| T |
24213840 |
gtctcttcatctgacgtcgttgtggatcccacatgcaatctttggtttcgtcttttccttccttcctcctccaccactgccaccacaaaatctttgcctg |
24213939 |
T |
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| Q |
120 |
ttatcatattctttcatggtggtggctatgcatatatgtctccctcttctattccataccacatgctttgtcgcttattttgtcgttcttttcctaccat |
219 |
Q |
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| T |
24213940 |
ttatcatattctttcatggtggtggctatgcatatatgtctccctcttctattccataccacatgctttgtcgcttattttgtcgttcttttcctgccat |
24214039 |
T |
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| Q |
220 |
tgttgtgtctgttaattatggtctttcccccgaac |
254 |
Q |
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| T |
24214040 |
tgttgtgtctgttaattatggtctttcccccgaac |
24214074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 24210410 - 24210491
Alignment:
| Q |
20 |
gtctcttcatctgacgtcgttgtggatcccacatgcaatctttggtttcgtcttttccttccttcctcctccaccactgcca |
101 |
Q |
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| T |
24210410 |
gtctcttcctctgaagtcgttgtggaccccacatgtaacctttcgtttcatctcttcattccttcctccaccaccaatgcca |
24210491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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