View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_34 (Length: 252)
Name: NF19242_high_34
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 46116864 - 46116642
Alignment:
| Q |
16 |
gaacccatgtctacttccatcaactctgcgagttttcttcctttgcttgctcatgtttatgtttagactcacatttggagggttcgaaaaacagaatgaa |
115 |
Q |
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| T |
46116864 |
gaacccatgtctacttccatcaactctgcgagttttcttcctttgcttgctcatgtttatgtttagactcacatttggagggttcgaaaaacagaatgaa |
46116765 |
T |
|
| Q |
116 |
gcagcaacagcctgctcaaggtataaaaacgaactggtatcatgacattgtatacatgttttagaatcgaaataatttaagctcaacaaatatgatactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46116764 |
gcagcaacagcctgctcaaggtataaaaacgaactggtatcatgacattgtatacatgttttagaatcaaaataatttaagctcaacaaatatgatactt |
46116665 |
T |
|
| Q |
216 |
ttctctggccaagctatcatgat |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
46116664 |
ttctctggccaagctatcatgat |
46116642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 46129998 - 46129776
Alignment:
| Q |
16 |
gaacccatgtctacttccatcaactctgcgagttttcttcctttgcttgctcatgtttatgtttagactcacatttggagggttcgaaaaacagaatgaa |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129998 |
gaacccatgtctacttccatcaactctgcgagttttcttcctttgcttgctcatgtttatgtttagactcacatttggagggttcgaaaaacagaatgaa |
46129899 |
T |
|
| Q |
116 |
gcagcaacagcctgctcaaggtataaaaacgaactggtatcatgacattgtatacatgttttagaatcgaaataatttaagctcaacaaatatgatactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46129898 |
gcagcaacagcctgctcaaggtataaaaacgaactggtatcatgacattgtatacatgttttagaatcaaaataatttaagctcaacaaatatgatactt |
46129799 |
T |
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| Q |
216 |
ttctctggccaagctatcatgat |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
46129798 |
ttctctggccaagctatcatgat |
46129776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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