View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_high_39 (Length: 238)
Name: NF19242_high_39
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45545853 - 45546072
Alignment:
| Q |
1 |
ttgtcatcttattgtttatttgttgtggatttcagatttagttggagttgttaagaatgtgtcttcaaccatgagcatccgaagaaagagcaacaatgag |
100 |
Q |
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| T |
45545853 |
ttgtcatcttattgtttatttgttgtggatttcagatttagttggagttgttaagaatgtgtcttcaaccatgagcatccgtagaaagagcaacaatgag |
45545952 |
T |
|
| Q |
101 |
actgttccaaagcgtgacattactattgccgatgaaacgttagtgttttcgattctcttttacagtgttaggcaagtgtttattttataatgnnnnnnng |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
45545953 |
actgttccaaagcgtgacattactattgccgatgaaacgttagtgttttcgattctcttttacagtgttaggcaagtg-ttattttataatgtgtttttg |
45546051 |
T |
|
| Q |
201 |
atcaatccctatgcttgacat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45546052 |
atcaatccctatgcttgacat |
45546072 |
T |
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