View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19242_high_5 (Length: 641)

Name: NF19242_high_5
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19242_high_5
NF19242_high_5
[»] chr2 (5 HSPs)
chr2 (514-624)||(28220359-28220472)
chr2 (381-505)||(28218023-28218147)
chr2 (397-500)||(8178731-8178834)
chr2 (434-500)||(45328894-45328960)
chr2 (433-492)||(16291553-16291612)
[»] chr4 (3 HSPs)
chr4 (376-505)||(48624748-48624877)
chr4 (454-500)||(27452402-27452448)
chr4 (450-483)||(16001023-16001056)
[»] chr5 (4 HSPs)
chr5 (376-500)||(25924-26048)
chr5 (376-500)||(1289747-1289873)
chr5 (397-500)||(7090193-7090296)
chr5 (401-499)||(21913203-21913301)
[»] chr3 (4 HSPs)
chr3 (376-500)||(51449923-51450047)
chr3 (376-500)||(52137129-52137253)
chr3 (376-468)||(3367764-3367855)
chr3 (433-504)||(9257038-9257109)
[»] chr8 (3 HSPs)
chr8 (434-500)||(15217515-15217581)
chr8 (401-494)||(21239700-21239793)
chr8 (430-497)||(13587653-13587721)
[»] chr1 (1 HSPs)
chr1 (397-500)||(49349652-49349755)
[»] chr6 (2 HSPs)
chr6 (376-500)||(6080387-6080511)
chr6 (434-500)||(20429914-20429980)
[»] scaffold0001 (1 HSPs)
scaffold0001 (435-500)||(440839-440904)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 514 - 624
Target Start/End: Original strand, 28220359 - 28220472
Alignment:
Q  514 gttaccattgtccaagcttctctattcaacttcgggaagattgatttttggctccgtgaagttgaccgtgaaatcaccatccaat----gaaagaatcaa 609  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||     
T  28220359 gttaccatcgtccaagcttctctattcaacttcgggaagattgatttt-ggctccgtgaagttgaccgtgaaatcaccatccaatgaaagaaagaatcag 28220457  T
Q  610 agatggttccaatct 624  Q
    |||||||||||||||    
T  28220458 agatggttccaatct 28220472  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 381 - 505
Target Start/End: Original strand, 28218023 - 28218147
Alignment:
Q  381 aatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacac 480  Q
    |||||||| || ||| |||||||||||||  |||| |||||||||| ||||||||||| ||||  ||| ||||||||| || |||||||||||||||||     
T  28218023 aatcttctcgtttgatttcctaataagaaagaaatctatctgagaataagtcaccccattcttgcatgtgataagatgttcatctcttttcctaaaacat 28218122  T
Q  481 gtattagttatagtaagatcgaaac 505  Q
    |||||| |||||||| |||| ||||    
T  28218123 gtattaattatagtaggatcaaaac 28218147  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 397 - 500
Target Start/End: Complemental strand, 8178834 - 8178731
Alignment:
Q  397 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 496  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||||| |||||||||| ||||||| ||||| ||||||| ||||||||    
T  8178834 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataaaatgctcctctattttcctgaaacaagtattagctatagtaa 8178735  T
Q  497 gatc 500  Q
    ||||    
T  8178734 gatc 8178731  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 45328894 - 45328960
Alignment:
Q  434 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 500  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  45328894 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagcgatagtaagatc 45328960  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 16291612 - 16291553
Alignment:
Q  433 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttata 492  Q
    ||||||||||| || | |||||||||||||||||||||||| ||||| ||||||| ||||    
T  16291612 accccactcttgtaagtgataagatgctcctctcttttcctgaaacaagtattagctata 16291553  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 376 - 505
Target Start/End: Original strand, 48624748 - 48624877
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 475  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | ||| |||||||||||||||||||| |    
T  48624748 aaacaaatcttcctgtcagatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgattagatgctcctctcttttcctga 48624847  T
Q  476 aacacgtattagttatagtaagatcgaaac 505  Q
    |||| ||||||| |||||||||||| ||||    
T  48624848 aacaagtattagctatagtaagatcaaaac 48624877  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 500
Target Start/End: Original strand, 27452402 - 27452448
Alignment:
Q  454 agatgctcctctcttttcctaaaacacgtattagttatagtaagatc 500  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  27452402 agatgctcatctcttttcctaaaacatgtattagctatagtaagatc 27452448  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 16001056 - 16001023
Alignment:
Q  450 gataagatgctcctctcttttcctaaaacacgta 483  Q
    ||||||||||||||||||||||||||||||||||    
T  16001056 gataagatgctcctctcttttcctaaaacacgta 16001023  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 26048 - 25924
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 475  Q
    |||| ||||||  ||||||| ||||||||||||| ||||| |||||||||| |  | | | ||||||| || | |||||||||||||||||| |||| ||    
T  26048 aaacaaatctttatgtatgaattcctaataagaaaaaaatctatctgagaacatattatcgcactcttgtaagtgataagatgctcctctctgttccaaa 25949  T
Q  476 aacacgtattagttatagtaagatc 500  Q
    |||||||||||| |||| |||||||    
T  25948 aacacgtattagctataataagatc 25924  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 1289747 - 1289873
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaa-gaaa-atatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcct 473  Q
    |||| ||||||| |||  || ||||||||||||| |||| ||||||||||||| | |  ||| ||||||| || | ||||||||||||||||||||||||    
T  1289747 aaacaaatcttcctgtcggatttcctaataagaaagaaatatatatctgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcct 1289846  T
Q  474 aaaacacgtattagttatagtaagatc 500  Q
     ||||| ||||||| ||||||||||||    
T  1289847 gaaacaagtattagctatagtaagatc 1289873  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 500
Target Start/End: Complemental strand, 7090296 - 7090193
Alignment:
Q  397 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 496  Q
    |||||||||||||  ||||  ||||||||| | || | ||| ||||| |||| ||||||||||||| |||||||| || |||||||||||| || |||||    
T  7090296 ttcctaataagaaagaaattcatctgagaacatgttaacccgctcttgtatgtgataagatgctccactcttttcatagaacacgtattagctacagtaa 7090197  T
Q  497 gatc 500  Q
    ||||    
T  7090196 gatc 7090193  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 499
Target Start/End: Complemental strand, 21913301 - 21913203
Alignment:
Q  401 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagat 499  Q
    |||||||||  |||| |||||| ||| | | ||||||||| ||||||  ||||||||| ||| |||||| | |||| ||| |||||| |||||||||||    
T  21913301 taataagaaagaaatttatctgtgaacatgccaccccactattatatatgataagatgttccactctttacttaaagcacttattagctatagtaagat 21913203  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 500
Target Start/End: Original strand, 51449923 - 51450047
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 475  Q
    |||| ||||||| |||  || |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||||||| ||||||| |    
T  51449923 aaacaaatcttcctgtcggatttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcctctattttcctga 51450022  T
Q  476 aacacgtattagttatagtaagatc 500  Q
    |||| ||||||| ||||||||||||    
T  51450023 aacaagtattagctatagtaagatc 51450047  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 52137253 - 52137129
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 475  Q
    |||| ||||||| |||  || |||||||||||||  |||| || ||||||| | |  |||||||||||  | | |||| ||||||||||||||||||| |    
T  52137253 aaacaaatcttcctgtcggatttcctaataagaaagaaatctacctgagaacatgagaccccactcttgaaagtgataggatgctcctctcttttcctga 52137154  T
Q  476 aacacgtattagttatagtaagatc 500  Q
    |||| ||||||| ||||||||||||    
T  52137153 aacaagtattagctatagtaagatc 52137129  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 468
Target Start/End: Complemental strand, 3367855 - 3367764
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctctt 468  Q
    |||| ||||||| |||  |||||| |||||||||  |||| ||||| |||| | |||||| ||||||| ||||||||||||||||||||||||    
T  3367855 aaacaaatcttcatgtcagacttcttaataagaaagaaatctatct-agaacatgtcaccgcactcttgtatgcgataagatgctcctctctt 3367764  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 9257109 - 9257038
Alignment:
Q  433 accccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatcgaaa 504  Q
    ||||||||||| || | ||||| |||||| |||||||| |||||||| ||||||| ||  ||||||||||||    
T  9257109 accccactcttgtaagtgataaaatgctcatctctttttctaaaacatgtattagctacggtaagatcgaaa 9257038  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 15217515 - 15217581
Alignment:
Q  434 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 500  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15217515 ccccactcttgtaagtgatgagatgctcctctcttttcctaaaacacgtattagctatagtaagatc 15217581  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 21239700 - 21239793
Alignment:
Q  401 taataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagt 494  Q
    |||||| || || ||||||||||||| | ||||||| | |||| || | |||||||||||| |||||||| ||||||||| |||||| ||||||    
T  21239700 taataaaaaaaatatatatctgagaacatgtcacccaattcttgtaagtgataagatgctcatctctttttctaaaacacatattagctatagt 21239793  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 13587721 - 13587653
Alignment:
Q  430 gtcaccccactcttatatgcgataagatgctcctctcttttcct-aaaacacgtattagttatagtaag 497  Q
    |||||||| ||||| || | ||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  13587721 gtcacccctctcttgtaagtgataagatgctcctctctttttctaaaaaaatgtattagctatagtaag 13587653  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 397 - 500
Target Start/End: Original strand, 49349652 - 49349755
Alignment:
Q  397 ttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaa 496  Q
    |||||||||||||  |||| |||||||||| | |  ||||||||||| || | |||||||||||| ||| ||||||| ||||| ||||||| ||||||||    
T  49349652 ttcctaataagaaagaaatctatctgagaacatgagaccccactcttgtaagtgataagatgctcatctattttcctgaaacaagtattagctatagtaa 49349751  T
Q  497 gatc 500  Q
    ||||    
T  49349752 gatc 49349755  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 6080511 - 6080387
Alignment:
Q  376 aaaccaatcttcttgtatgacttcctaataagaagaaaatatatctgagaagaagtcaccccactcttatatgcgataagatgctcctctcttttcctaa 475  Q
    |||| ||||||| |||  || |||||||||||||  |||| ||| |||||| | |  ||| ||||||| || | |||||||||||||||||||||||  |    
T  6080511 aaacaaatcttcctgtcggatttcctaataagaaataaatctatttgagaacatgagacctcactcttgtaagtgataagatgctcctctcttttcccga 6080412  T
Q  476 aacacgtattagttatagtaagatc 500  Q
    |||| ||||||| ||||||||||||    
T  6080411 aacaagtattagctatagtaagatc 6080387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 20429914 - 20429980
Alignment:
Q  434 ccccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 500  Q
    ||||||||||||| | ||| ||||| ||||||||||||||||| |||||||||  ||||||||||||    
T  20429914 ccccactcttataagtgatgagatggtcctctcttttcctaaagcacgtattaactatagtaagatc 20429980  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 440904 - 440839
Alignment:
Q  435 cccactcttatatgcgataagatgctcctctcttttcctaaaacacgtattagttatagtaagatc 500  Q
    ||||||||| || | ||| |||||||||||||||||||||||| ||||||||   |||||||||||    
T  440904 cccactcttgtaagtgatgagatgctcctctcttttcctaaaatacgtattaacgatagtaagatc 440839  T

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