View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19242_low_1 (Length: 832)
Name: NF19242_low_1
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_1 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0071 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 45 - 832
Target Start/End: Original strand, 40695266 - 40696041
Alignment:
| Q |
45 |
aacaccttataaaatcctctaaaacacacttaaaacattttgaatttcagaatccgaacatgacatcttgacattttggataaattaatgattgggccct |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| ||||||||||||| |||||| |
|
|
| T |
40695266 |
aacaccttataaaatcctctaaaacacacttaaaacatttcaaatttcagaatccgaatat-----cttgattttttgcataaattaatgatcgggcccg |
40695360 |
T |
|
| Q |
145 |
gcatgaaagcatgaaattaagttgtaaaaagttatgtactagtaatcatattgcaatcaagacgaccttgcaattgcatgatgttgacactaaaacatgc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40695361 |
gcatgaaagcatgaaattaagttgtaaaaagt-atgtactagtaatcatattgcaatcaagacgaccttgcaattgcatgatgttgacactaaaacatgc |
40695459 |
T |
|
| Q |
245 |
atcattttcaacctttctatggttaaagcgacatgcatcaaatgtggctgaaaattgacatttgcaaactgcaaactttaacttgtatccaataaaaatt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40695460 |
atcattttcaacctttctatggttaaagcgacatgcatcaaatgtggctgaaaattgacatttgca-------aactttaacttgtatccaataaaaatt |
40695552 |
T |
|
| Q |
345 |
aaaccgacaatgtatcgtggtaactactactagtaagtaaccaatgttattgcctatatatagctttcatacttggcataaataatttgttttaaagaaa |
444 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40695553 |
aaaccgacaatgtatcgtagtaactactactagtaagtaaccaatgttattgcctatatatagctttcatacttggcataaataatttgttttaaagaaa |
40695652 |
T |
|
| Q |
445 |
aagaatatagggaattattgctttcatcttgatattacaactcaatgtctttgtcacaatctacatatctccaatctccttaacaaaaggtgcatctttt |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40695653 |
aagaatatagggaattattgctttcatcttgatattacaactcaatgtctttgtcacaatctacatatctccaatctccttaacaaaaggtgcatctttt |
40695752 |
T |
|
| Q |
545 |
caatggaaaccaatgcagatgaaacacatggcagtggtgatcataacaagtagagacctgttgtt-aatatttacaaagaaaaacacaaaatgaataact |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40695753 |
caatggaaaccaatgcagatgaaacacatggcagtggtgatcatagcaagtagagacctgttgttaaatatttacaaagaaaaacacaaaatgaataact |
40695852 |
T |
|
| Q |
644 |
catactagcttataagcattatttcacataaattatgtcaaaactcaaaacaagttaatcataataccttgttgtatgtggattgtatgccttggatgat |
743 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40695853 |
catattagcttataagcattatttcaaataaattatgtcacaactcaaaacaagttaatcataataccttgttgtatgtggattgtatgccttggatgat |
40695952 |
T |
|
| Q |
744 |
ggaacgtttggcggtggtgggggtggaggtgacagtgatggaggaagaggaggagtaggaggtggggctgaaggttgatacttgccttt |
832 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40695953 |
ggaacgtttggcggtggtgggggtggaggtgacagtgatggaggaagaggaggagtaggaggtggagctgaaggttgatacttgccttt |
40696041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 15322250 - 15322300
Alignment:
| Q |
10 |
ttatgtaattcgaattataaaattcaaacggcataaacaccttataaaatc |
60 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
15322250 |
ttatgtaatttggattataaaattcaaacgacataaacactttataaaatc |
15322300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 48401023 - 48400948
Alignment:
| Q |
26 |
ataaaattcaaacggcataaacaccttataaaatcctctaaaacacacttaaaacattttgaatttcagaatccgaa |
102 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |||| ||||||| ||||||||||| | |||| |||||||||| |
|
|
| T |
48401023 |
ataaaattcggacggcataaacaccctataaaaacctccaaaacac-gttaaaacatttcggattttagaatccgaa |
48400948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 563910 - 563857
Alignment:
| Q |
18 |
ttcgaattataaaattcaaacggcataaacaccttataaaatcctctaaaacac |
71 |
Q |
| |
|
||||||||||| |||| ||| | |||||||||| |||||||||||| ||||||| |
|
|
| T |
563910 |
ttcgaattatagaatttaaatgacataaacaccctataaaatcctcaaaaacac |
563857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 46621515 - 46621560
Alignment:
| Q |
15 |
taattcgaattataaaattcaaacggcataaacaccttataaaatc |
60 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46621515 |
taattcgaattataaaattcaaacaacataaacaccttataaaatc |
46621560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 15462141 - 15462088
Alignment:
| Q |
18 |
ttcgaattataaaattcaaacggcataaacaccttataaaatcctctaaaacac |
71 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
15462141 |
ttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacac |
15462088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 10711739 - 10711673
Alignment:
| Q |
41 |
cataaacaccttataaaatcctctaaaacacacttaaaacattttgaatttcagaatccgaacatgac |
108 |
Q |
| |
|
|||||||||| ||||||| | || |||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
10711739 |
cataaacaccctataaaaccttccaaaacaca-ttaaaacatttcggatttcagaatccgaacatgac |
10711673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 51 - 104
Alignment:
| Q |
18 |
ttcgaattataaaattcaaacggcataaacaccttataaaatcctctaaaacac |
71 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
51 |
ttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacac |
104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 22417352 - 22417298
Alignment:
| Q |
18 |
ttcgaattataaaattcaaacggcataaacaccttataaaatcctctaaaacaca |
72 |
Q |
| |
|
|||| |||||| ||| ||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
22417352 |
ttcggattatataatccaaacggcataaacaccctataaaaacctccaaaacaca |
22417298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22023743 - 22023784
Alignment:
| Q |
17 |
attcgaattataaaattcaaacggcataaacaccttataaaa |
58 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
22023743 |
attcgaattatagaattccaacggcataaacaccctataaaa |
22023784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University