View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_13 (Length: 415)
Name: NF19242_low_13
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 10036299 - 10035912
Alignment:
| Q |
18 |
acttccagcctgattttcggtacctattggcagctataatttggagtatttggaagcatcgcaacttgaagctttggcagaatgaacatgaagtatgagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10036299 |
acttccagcctgattttcggtacctattggcagctataatttggagtatttggaagcatcgcaacttgaagctttggcagaatgaacatgaagtatgagc |
10036200 |
T |
|
| Q |
118 |
ccatgttgtggatcgtgctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttctg |
217 |
Q |
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||| |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10036199 |
ccaggttgtggaccgtgctcggcacatcatggacaaatgggattgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagctgctg |
10036100 |
T |
|
| Q |
218 |
ttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcc |
317 |
Q |
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| T |
10036099 |
ttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgcc |
10036000 |
T |
|
| Q |
318 |
tgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
405 |
Q |
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| T |
10035999 |
tgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
10035912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 10096679 - 10096280
Alignment:
| Q |
18 |
acttccagcctgattttcggtacctattggcagctataatttggagtatttggaagcatcgcaactt-gaagctttggcagaatgaacatgaagtatgag |
116 |
Q |
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| T |
10096679 |
acttccagcctgattttcggtacctattggcagctataatttggagtatttggaagcattgcaactttgaagctttggcagaatgaacatgaagtatgag |
10096580 |
T |
|
| Q |
117 |
cccatgttgtggatcgtgctcggcacatcatggacgaatgggatcgcgacaacagcaagaaattggtcatgctgcagctgtcacgcacccaccagcttct |
216 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
10096579 |
cccaggttgtggaccgtgctcggcacatcatggacgaatgggattgcgacaacaacaagaaattggtcatgctgcagctgtcacgcacccactagctgct |
10096480 |
T |
|
| Q |
217 |
gttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttc-- |
314 |
Q |
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| T |
10096479 |
gttcaggagaaaatgcttgtaccagatcctatagagttgatacgatggcagatacctcttcctggtcgagttaaatgcaacattgatgcctcattttcgc |
10096380 |
T |
|
| Q |
315 |
---------gcctgtgcagaaccgtacctgtatcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
405 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10096379 |
ctcattttcgcctgtgcagaacggtacctgtttcagaatttgcctacgtgataaggaaggcgcctatatgctagcgaaaaccatgagcttctcacctatg |
10096280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 49076779 - 49076892
Alignment:
| Q |
44 |
ttggcagctataatttggagtatttggaagcatcgcaacttgaagctttggcagaatgaacatgaagtatgagcccatgttgtggatcgtgctcggcaca |
143 |
Q |
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||||||||||| ||||||||| |||||||||| || ||||| || | |||||||||||| ||||| |||| || || ||||| || |||||| | |||| |
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| T |
49076779 |
ttggcagctatcatttggagtctttggaagcaccgtaacttaaaattatggcagaatgaaaatgaattatgtgctcacgttgttgaccgtgctagacaca |
49076878 |
T |
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| Q |
144 |
tcatggacgaatgg |
157 |
Q |
| |
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| |||||||||||| |
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| T |
49076879 |
ttatggacgaatgg |
49076892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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