View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_15 (Length: 391)
Name: NF19242_low_15
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 87 - 391
Target Start/End: Original strand, 28939228 - 28939532
Alignment:
| Q |
87 |
gttgaggcctaagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccac |
186 |
Q |
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| T |
28939228 |
gttgaggcctgagaagttactaggattattatttgtataaattttatggagaaattcaagtacatgttcatataaaaaatcatcgaactgaatcctccat |
28939327 |
T |
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| Q |
187 |
aatcaccactatggtgcacccgactatatactgttagattaaaagagagaaaaatcatctcataatctaacaatctacacagccggctatagaggatacg |
286 |
Q |
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| T |
28939328 |
aatcaccactatggtgcacccgactatagactgttagattaaaagagaaaaaaatcatctcataatctaacaatctacacagccggctatagaggattcg |
28939427 |
T |
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| Q |
287 |
ggttaaaaaatcactcaaggagttggaataagacaaacagcttggcgatttcgatcttgtgtagcaccgcagcctctccggccaaaaacgagcctttaga |
386 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28939428 |
ggttaaaaaatcactcaaggtgttggaataagacgaacagcttggcgatttcgatcttgtgtagcaccgcagcctctccggccaaacacgagcctttaga |
28939527 |
T |
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| Q |
387 |
ttaat |
391 |
Q |
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||||| |
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| T |
28939528 |
ttaat |
28939532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28939145 - 28939203
Alignment:
| Q |
1 |
agtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca |
59 |
Q |
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| T |
28939145 |
agtaataataaactcaaaacaaagggtagcttagtgcatgagggttaaatacacatgca |
28939203 |
T |
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