View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19242_low_18 (Length: 370)

Name: NF19242_low_18
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19242_low_18
NF19242_low_18
[»] chr3 (7 HSPs)
chr3 (16-257)||(38792559-38792801)
chr3 (16-257)||(408194-408436)
chr3 (16-257)||(415506-415748)
chr3 (176-257)||(49962412-49962493)
chr3 (176-255)||(6458040-6458119)
chr3 (176-255)||(6758729-6758808)
chr3 (338-368)||(38792448-38792478)
[»] chr6 (3 HSPs)
chr6 (16-257)||(24184676-24184918)
chr6 (176-257)||(20786751-20786832)
chr6 (199-257)||(8532254-8532312)
[»] chr1 (2 HSPs)
chr1 (16-257)||(24357361-24357603)
chr1 (16-257)||(24344983-24345225)
[»] chr2 (2 HSPs)
chr2 (176-257)||(15047300-15047381)
chr2 (176-257)||(38176500-38176581)
[»] chr7 (1 HSPs)
chr7 (176-255)||(39676732-39676811)
[»] chr5 (1 HSPs)
chr5 (176-255)||(42632882-42632961)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 38792801 - 38792559
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    ||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792801 cagatataagatttattgttttgtctatttctctttgataattcgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 38792702  T
Q  116 actaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38792701 actaagcattcatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcggtgaaaatggtagtgtgaatattgtagctcccttcaatcc 38792602  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  38792601 aaattaagatcatcttggtgaagtaaacaaggttcaaatatag 38792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 408436 - 408194
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||  |||| ||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  408436 cagatataagattcgttgctctatctatttctatttgataattcatattctagatgattccatacttttattttaaaatgcacctgatattacattgcat 408337  T
Q  116 actaagcat-tatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||||||||||||||||    
T  408336 actaagaatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgtagctcccttcaatcc 408237  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  408236 aaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 408194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 415506 - 415748
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    |||||||||||||| ||| | ||||||||||| ||||||||||  |||| ||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  415506 cagatataagattcgttgttctatctatttctatttgataattcatattctagatgattccatacttttattttaaaatgcacctgatattacattgcat 415605  T
Q  116 actaagcat-tatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||||||||||||||||    
T  415606 actaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgtagctcccttcaatcc 415705  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  415706 aaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 415748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 49962412 - 49962493
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  49962412 tgaaaatggtagtgtgaatactttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgtaaatatag 49962493  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 6458119 - 6458040
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 255  Q
    ||||||||||| |||| ||||| | ||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||    
T  6458119 tgaaaatggtaatgtggatatttttgctcccttcaatctaaatcaagaacattttggtcaagtaaacaaggtacaaatat 6458040  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 6758729 - 6758808
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 255  Q
    ||||||||||| |||| ||||| | ||||| |||||||||||| |||||||| ||||| ||||||||||||| |||||||    
T  6758729 tgaaaatggtaatgtggatatttttgctcctttcaatccaaatcaagaacattttggtcaagtaaacaaggtacaaatat 6758808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 368
Target Start/End: Complemental strand, 38792478 - 38792448
Alignment:
Q  338 atcatgaacataacttattaagtatgtattc 368  Q
    |||||||||||||||||||||||||||||||    
T  38792478 atcatgaacataacttattaagtatgtattc 38792448  T

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Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 24184918 - 24184676
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||  |||| ||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  24184918 cagatataagattcgttgctctatctatttctatttgataattcatattctagatgattccatacttttattttaaaatgcacctgatattacattgcat 24184819  T
Q  116 actaagcat-tatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||||||||||||||||    
T  24184818 actaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgtagctcccttcaatcc 24184719  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  24184718 aaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 24184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 20786832 - 20786751
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  20786832 tgaaaatggtagtgtgaatactgtagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 20786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 8532312 - 8532254
Alignment:
Q  199 tagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  8532312 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatatag 8532254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 24357361 - 24357603
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||  |||| ||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  24357361 cagatataagattcgttgctctatctatttctatttgataattcatattctagatgattccatacttttattttaaaatgcacctgatattacattgcat 24357460  T
Q  116 actaagcat-tatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||||||||||||||||    
T  24357461 actaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgtagctcccttcaatcc 24357560  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  24357561 aaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 24357603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 24344983 - 24345225
Alignment:
Q  16 cagatataagattcattgctttatctatttctctttgataatttgtattatagatgatctcatacttttattttaaaatgtacctgatattacattgcat 115  Q
    |||||||||||||  ||| | ||||||||||| ||||||||||  |||| ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  24344983 cagatataagatttgttgttctatctatttctatttgataattcatattctagatgattccatacttttattttaaaatgtacttgatattacattgcat 24345082  T
Q  116 actaagcat-tatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgtagctcccttcaatcc 214  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||   |||  |||  | ||||||||||||||| |||| ||||||||||||||||||    
T  24345083 actaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtacggagtggtgaaaatggtagtgtaaatactgtagctcccttcaatcc 24345182  T
Q  215 aaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||| ||||| |||||||||||| |||||||||||||||||||    
T  24345183 aaatcaagaatatcttggtgaagaaaacaaggtgcaaatatag 24345225  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 15047381 - 15047300
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  15047381 tgaaaatggtagtgtgaatactgtagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 15047300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 38176581 - 38176500
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 257  Q
    |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  38176581 tgaaaatggtagtgtgaatactttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 38176500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 39676811 - 39676732
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 255  Q
    ||||||||||| |||| ||||| | |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  39676811 tgaaaatggtaatgtggatatttttgctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 39676732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 42632961 - 42632882
Alignment:
Q  176 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 255  Q
    ||||||||||| |||||||| | || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  42632961 tgaaaatggtaatgtgaatactttaactcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 42632882  T

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