View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_19 (Length: 370)
Name: NF19242_low_19
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3345965 - 3345624
Alignment:
| Q |
1 |
aatcaataaataaaaccaattgtgctctctagtcatttcacttaattgtgaaaccaattcagtccnnnnnnnnnnnnn-gagagagaaatcaattcagtc |
99 |
Q |
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| T |
3345965 |
aatcaataaataaaaccaattgtgttctctagtcatttcacttaattgtgaaaccaattcagtccttttttttttttttgagagagaaatcaattcagtc |
3345866 |
T |
|
| Q |
100 |
ctatagctagtaaatctcaacttgtgttttgcaagttgctcctcttgacatgactaaaaattgatactatatgtctaaacgaagatgatgcaagtagtca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
3345865 |
ctatagctagtaaatctcaacttgtgttttgcaagttgctcctcttgacatgactaaaaattgatactatatgtctaaacgaaaatgatgtaagtagtca |
3345766 |
T |
|
| Q |
200 |
aaattgatttaagtttataggggatatcttatga-nnnnnnnnaaaagccaaacaaaaattatgtattacaaattattctagcataaggtgttcaaagaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3345765 |
aaattgatttaagtttataggggatatcttatgattattttttaaaagccaaacaaaaattatgtattacaaattattctagcataaggtgtttaaagaa |
3345666 |
T |
|
| Q |
299 |
tagaataaaatagtcaatgcaatgtaaccaacctacaagaat |
340 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3345665 |
tagaataaaatagtcaatgcaacgtaaccaacctacaagaat |
3345624 |
T |
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