View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_2 (Length: 817)
Name: NF19242_low_2
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 294 - 797
Target Start/End: Original strand, 40790508 - 40791011
Alignment:
| Q |
294 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
393 |
Q |
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| T |
40790508 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
40790607 |
T |
|
| Q |
394 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40790608 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
40790707 |
T |
|
| Q |
494 |
gtacaactttgtgaagaccatataatgatctcaatcaatcatgatcgatagatggggtcatcgatcaaaatactaaagattctttctcacttcagtgcta |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
40790708 |
gtacaactttgtgaagaccatataatgatctcaatcaatcatgatagatagatggggtcatcaatcaaaatactaaagattctttcttacttcagtgcta |
40790807 |
T |
|
| Q |
594 |
aaaattccattcatgnnnnnnnncttcatatatatgtagatgtggccatacgtgggagaagggtccatataatatgcaaaggcatattgtaaaagatcct |
693 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40790808 |
aaaattccattcatgttttttttcttcatatatatgtagttgtggccatacgtgggagaagggtccatataatatgcaaaggcatattgtaaaagatcct |
40790907 |
T |
|
| Q |
694 |
taattatcttacnnnnnnnnaatgatttgttccccaccaatattcttcacctccatgaatatgcagagtaaccaaaattccatattgttgtcattcttgg |
793 |
Q |
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| T |
40790908 |
taattatcttacttttttttaatgatttgttccccaccaatattcttcacctccatgaatatgcagagtaaccaaaattccatattgttgtcattcttga |
40791007 |
T |
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| Q |
794 |
tcct |
797 |
Q |
| |
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|||| |
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| T |
40791008 |
tcct |
40791011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 40787232 - 40787412
Alignment:
| Q |
13 |
aatatatagcagctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataa |
109 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40787232 |
aatatatagcagctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattt------- |
40787324 |
T |
|
| Q |
110 |
ttgtcttttagttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
200 |
Q |
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| T |
40787325 |
---tcatttagttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttc |
40787412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 15007608 - 15007803
Alignment:
| Q |
13 |
aatatatagcagctggtattataaca-----gatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctat |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007608 |
aatatatagcagctggtattataacattgaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctat |
15007707 |
T |
|
| Q |
108 |
aattgtcttttagttatgcctcataattcaaatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||||||| |
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| T |
15007708 |
aattgtcttttagttaggcctcataattcaaatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttc |
15007803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 52311151 - 52311122
Alignment:
| Q |
171 |
acttgaggtaatattgattctcgttacttc |
200 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52311151 |
acttgaggtaatattgattctcgttacttc |
52311122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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