View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_20 (Length: 360)
Name: NF19242_low_20
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 41097712 - 41098051
Alignment:
| Q |
7 |
ggttggggtaaggatgctgaaagaatttaatttggtattgttaagaaagtggtgttggaggttgtatgttgatcagggaagaagggtatggtttaaagtt |
106 |
Q |
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| T |
41097712 |
ggttggggtaaggatgctgaaagaatttaatttggtattgttaagaaagtggtgttggaggttgtatgttgatcag---agaaggttatggtttaaagtt |
41097808 |
T |
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| Q |
107 |
ttaacagttaaatatgaagttgaagagggtcataccaagagtggtgggttacaggcgtcactgtggtgaaatgagttatggtctattagcaagggtgtag |
206 |
Q |
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| T |
41097809 |
ttaacagttaaatatgaagttgaagagggtcataccaggagtggtgggttacaggcgtcactgtggtgaaatgagttatggtctattagcaagggtgtag |
41097908 |
T |
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| Q |
207 |
taggtggggaggtgagttggtttaaggagaaggtgg-ttgaaagattggagatgggtagaacacctcattttagtgtcatccttggttagagagcgggtg |
305 |
Q |
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| T |
41097909 |
taggtggggaggtgagttggtttaaggagaaggtggtttgaaagattggagatgggtagagcacctcattttaatgtcatccttggttagagggcgagtg |
41098008 |
T |
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| Q |
306 |
cctgtgtcttagattttagcgtctatattatttagttgatgat |
348 |
Q |
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| T |
41098009 |
cctgcgtcttagattttagcgtctatattatttagttgatgat |
41098051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 4110033 - 4109931
Alignment:
| Q |
29 |
gaatttaatttggtattgttaagaaagtggtgttggaggttgtatgttgatcagggaagaagggtatggtttaaagttttaacagttaaatatgaagttg |
128 |
Q |
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| T |
4110033 |
gaattcaatttgacattgttaagaaaatgatgtttgaggttgtatgtagatcag---agagggttgtggtttaatgttttagctgctaaatatgaggttg |
4109937 |
T |
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| Q |
129 |
aagagg |
134 |
Q |
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| T |
4109936 |
aagagg |
4109931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 10562794 - 10562837
Alignment:
| Q |
24 |
tgaaagaatttaatttggtattgttaagaaagtggtgttggagg |
67 |
Q |
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| T |
10562794 |
tgaaagaatttaatttggctttgttaggaaagtggtgttggagg |
10562837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 31827090 - 31827142
Alignment:
| Q |
29 |
gaatttaatttggtattgttaagaaagtggtgttggaggttgtatgttgatca |
81 |
Q |
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| T |
31827090 |
gaatttaatttgatgttgttgagaaagtagtgttggaaattgtatgttgatca |
31827142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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