View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_21 (Length: 354)
Name: NF19242_low_21
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 10095919 - 10096263
Alignment:
| Q |
5 |
atctagtatttattgtgtttggattttagattccagcagtgtatttttctaaatttacacatccaaattttagatttaggatgtgttaaataccagattt |
104 |
Q |
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| T |
10095919 |
atcttgtatttattgtgtttggattttagattccagaagtgtatttttctaaatttacacatccaaattttagatttaggatgtgttaaataccagattt |
10096018 |
T |
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| Q |
105 |
tgagcaggagcacagacatttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtatatataagtaggaggaaatcatatcctgac |
204 |
Q |
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| T |
10096019 |
tgaataggaacacaaa-atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtata----agtaggaggaaatcatatcctgac |
10096113 |
T |
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| Q |
205 |
atgctgcaataatttggccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgactacaaagtccacgttgtcaaa |
304 |
Q |
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| T |
10096114 |
atgctgcaataatttggccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgaccacaaagtccacgttgtcaaa |
10096213 |
T |
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| Q |
305 |
ccgcatgtcctgtaaccattgtggtgcatgaaagagagtaagagcttctc |
354 |
Q |
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| T |
10096214 |
ccgcatgtcctgtaaccattgtggtgcatgaaagagagtaagagcttctc |
10096263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 354
Target Start/End: Original strand, 10035551 - 10035895
Alignment:
| Q |
5 |
atctagtatttattgtgtttggattttagattccagcagtgtatttttctaaatttacacatccaaattttagatttaggatgtgttaaataccagattt |
104 |
Q |
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| T |
10035551 |
atcttgtatttattgtgtttggattttagattccagaagtgtatttttctaaatttacacgtccaaattttagatttaggatgtgttaaataccagattt |
10035650 |
T |
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| Q |
105 |
tgagcaggagcacagacatttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtatatataagtaggaggaaatcatatcctgac |
204 |
Q |
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| T |
10035651 |
tgaataggaacacaaa-atttaattgatgcattcaacatgtttatattctgaaattgaaattcaaatgtata----agtaggaggaaatcatatcctgac |
10035745 |
T |
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| Q |
205 |
atgctgcaataatttggccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgactacaaagtccacgttgtcaaa |
304 |
Q |
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| T |
10035746 |
atattgcaataatttggccgaactctgtaacatcacttcttctcgagataactgcatcagccgtaatttttgagtcgaccacaaagtccacgttgtcaaa |
10035845 |
T |
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| Q |
305 |
ccgcatgtcctgtaaccattgtggtgcatgaaagagagtaagagcttctc |
354 |
Q |
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| T |
10035846 |
ccgcatgtcctgtaaccattgtggtgcatgaaagagagtaagagcttctc |
10035895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 49077326 - 49077214
Alignment:
| Q |
201 |
tgacatgctgcaataatttggccgaactctgtaacat-cacttcttctcgagataactgcatcagccgtaatttttgagtcgactacaaagtccacgttg |
299 |
Q |
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| T |
49077326 |
tgacatgctgcaattatttggccgaactcagtaacattcactttgt-tcgataagatatcatctgctgtaatttttgagtcgactacaaaatccacgttg |
49077228 |
T |
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| Q |
300 |
tcaaaccgcatgtc |
313 |
Q |
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| T |
49077227 |
tcaaaacgcatgtc |
49077214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 29358584 - 29358546
Alignment:
| Q |
200 |
ctgacatgctgcaataatttggccgaactctgtaacatc |
238 |
Q |
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| T |
29358584 |
ctgacatgctgcaattatttggccgaactcagtaacatc |
29358546 |
T |
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