View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_22 (Length: 345)
Name: NF19242_low_22
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 36130631 - 36130947
Alignment:
| Q |
1 |
atttataatcttctcatttactgacccatggacatacgttttctataactaaggttatcatgatgaacaaaatacgtcgacttctcatataagttcatta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
36130631 |
atttataatcttctcatttactgaaccatggacataagttttctagaagtaaggttatcatgg---acaaaatacgtcgacttctcatataagtttatta |
36130727 |
T |
|
| Q |
101 |
aaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtccctcacatacgtagacatccgtagcttgactggtttgagttacg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||| ||| ||||||| |
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| T |
36130728 |
aaaattgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggcccctcacatatgtagacatctgtagctcgactgatttaagttacg |
36130827 |
T |
|
| Q |
201 |
ggatgaacatccggaatacacataccaatccttcaaatcggatagaaccgcggctgaccccaattttcttttataaannnnnnnacatggaggaaattac |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
36130828 |
ggatgaacatccgaaatacacataccaatccttcaaatcggatagaaccgcggctgaccccaattttcttttataattttttttacatcgaggaaattac |
36130927 |
T |
|
| Q |
301 |
aaagttaccccattttaaac |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36130928 |
aaagttaccccattttaaac |
36130947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 10523422 - 10523552
Alignment:
| Q |
79 |
gacttctcatataagttcattaaaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtccctcacatacgtagacatccgt |
178 |
Q |
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|||||||||||||||||||| ||||| |||| |||| |||| |||||||| |||| ||||||||| || |||||||||||| || || ||||| ||| |
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| T |
10523422 |
gacttctcatataagttcatcaaaagctgtcatatttcaagagccctttggattacaaaaatatcattctttttggtccctcgtctatgtggacattcgt |
10523521 |
T |
|
| Q |
179 |
agcttgactggtttgagttacgggatgaaca |
209 |
Q |
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|| | || |||||||||||| | |||||||| |
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| T |
10523522 |
agttcgaatggtttgagttatgagatgaaca |
10523552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 36130544 - 36130456
Alignment:
| Q |
122 |
ccctttgggttaccaaaatatcaatcattttggtccctcacatacgtagacatccgtagcttgactggtttgagttacgggatgaacat |
210 |
Q |
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||||||| |||||||| ||||| ||||||||||||||||| || || |||||| |||| | || ||||||||||||| |||||||||| |
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| T |
36130544 |
ccctttgaattaccaaagtatcattcattttggtccctcacttatgtggacatcggtagttcgattggtttgagttaccggatgaacat |
36130456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 43224776 - 43224632
Alignment:
| Q |
67 |
acaaaatacgtcgacttctcatataagttcattaaaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtccctcacatac |
166 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| | || ||||| |||| |||||| | |||||||||||||||||||||||||||||| | || |
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| T |
43224776 |
acaaaatatgtcggcttctcatataagttcattaaaagctatcacatttgaagagccctttagattaccaaaatatcaatcattttggtccctcgcctat |
43224677 |
T |
|
| Q |
167 |
gtagacatccgtagcttgactggtttgagttacgggatgaacatc |
211 |
Q |
| |
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|| |||||| |||| | || | |||||||||| ||||||||||| |
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|
| T |
43224676 |
gtggacatctgtagttcgaatattttgagttacaggatgaacatc |
43224632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 26025057 - 26024902
Alignment:
| Q |
58 |
tcatgatgaacaaaatacgtcgacttctcatataagttcattaaaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtcc |
157 |
Q |
| |
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|||| ||| |||||||| |||||||||||||||||| |||||||||| ||| ||||| | || |||||| | |||||||||||||| |||||| |||| |
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| T |
26025057 |
tcattatggacaaaatatgtcgacttctcatataagatcattaaaagaggtcacatttta-gatcccttttgattaccaaaatatcattcatttcggtct |
26024959 |
T |
|
| Q |
158 |
ctcacatacgtagacatccgtagcttgactggtttgagttacgggatgaacatccgg |
214 |
Q |
| |
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||| | || || ||||||||||| | ||| ||||||| |||||||||||| ||||| |
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| T |
26024958 |
ctcgcctatgtggacatccgtagttcaactagtttgagctacgggatgaacttccgg |
26024902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 40542616 - 40542473
Alignment:
| Q |
67 |
acaaaatacgtcgacttctcatataagttcattaaaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtccctcacatac |
166 |
Q |
| |
|
|||||||| ||| |||||| | |||||||||||||||| | || ||||| |||| |||||||| |||| ||||||||| |||||||||||||| || |
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| T |
40542616 |
acaaaatatgtcaacttcttagataagttcattaaaagctatcacatttgaagagccctttggattacaaaaatatcagacattttggtccctcgtttat |
40542517 |
T |
|
| Q |
167 |
gtagacatccgtagcttgactggtttgagttacgggatgaacat |
210 |
Q |
| |
|
|| ||||| |||| | |||| |||||||||||||||||||||| |
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| T |
40542516 |
gtggacatatgtagttcgactagtttgagttacgggatgaacat |
40542473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 636724 - 636579
Alignment:
| Q |
69 |
aaaatacgtcgacttctcatataagttcattaaaagttgtcgcatttaaagaaccctttgggttaccaaaatatcaatcattttggtccctcacatacgt |
168 |
Q |
| |
|
|||||| || ||||||||| |||||||||||| | |||| | ||||| | | |||||||| ||||||||||| || |||||||||||| || | || || |
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| T |
636724 |
aaaatatgttgacttctcagataagttcattataggttgccacatttgagaagccctttggattaccaaaataccattcattttggtccttcgcctatgt |
636625 |
T |
|
| Q |
169 |
agacatccgtagcttgactggtttgagttacgggatgaacatccgg |
214 |
Q |
| |
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|||| |||| | ||||||||||||||||| ||||||||||||| |
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| T |
636624 |
ggacaattgtagttcgactggtttgagttacgagatgaacatccgg |
636579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 34674042 - 34674005
Alignment:
| Q |
67 |
acaaaatacgtcgacttctcatataagttcattaaaag |
104 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||| |
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|
| T |
34674042 |
acaaaatatgtcgacttctcagataagttcattaaaag |
34674005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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