View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_23 (Length: 331)
Name: NF19242_low_23
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 3345936 - 3346240
Alignment:
| Q |
15 |
agagaacacaattggttttatttattgattattactttttccatttgtttgagaaatcaagtattttctttgaagagacgtcatcccacaatgattattt |
114 |
Q |
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| T |
3345936 |
agagaacacaattggttttatttattgattattactttttccatttgtttgagaaatcaagtattttctttgaagagacgtcatcccacaatgattattt |
3346035 |
T |
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| Q |
115 |
tataatggcaacaaaaaatattgtaaattaattccttccacattatctcctttatagtaacatgcatgtagtggtgcttatcatctaacgattgtttagt |
214 |
Q |
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| T |
3346036 |
tataatggcaacaaaaaatattgtaaattaattccttccacattatctcctttatagtaa----catgtagtagtgcttatcatctaacgattgtttagt |
3346131 |
T |
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| Q |
215 |
ctt---ccaaaaaacaaaatcttac---tgtttaaccatgtggttattattatcccttgatgggtgtaaggatgattatttgcattgaattgaaattgtg |
308 |
Q |
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| T |
3346132 |
cttaaaaaaaaaaacaaaatcttacaattgtttaaccatgtggttattattatcccttgatgggtgtaaggatgattatttgcattgaattgaaattgtg |
3346231 |
T |
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| Q |
309 |
ggaagttat |
317 |
Q |
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| T |
3346232 |
ggaagttat |
3346240 |
T |
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