View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_24 (Length: 322)
Name: NF19242_low_24
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_24 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 28939818 - 28939508
Alignment:
| Q |
18 |
aatttgagtctggacctttgagttctaaccatttgggtcctcaagggacttttattggtgtttatgatggtcatggtggagctgaagcttctcaatttgt |
117 |
Q |
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| T |
28939818 |
aatttgagtctggacctttgagttctaaccatttgggtcctcaagggacttttattggtgtttatgatggtcatggtggagctgaagcttctcaatttgt |
28939719 |
T |
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| Q |
118 |
cagcgacaatcttttttgcaatctcaaaagtattttcattctctcttctttaccataacta------tatagattctcatattcattttgaaatagtttt |
211 |
Q |
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| T |
28939718 |
cagtgacaatcttttttgcaatctcaaaagtattttcattctctcttctttaccataactatatatatatagattctcatattcattttgaaatagtttt |
28939619 |
T |
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| Q |
212 |
ctgtatgttggtctcttatgtatattttcaaaataattgagggataagaaaatttgtagtcttttcggtcaaacatcggtcgttggattaatctaaaggc |
311 |
Q |
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| T |
28939618 |
ctgtatgttggtctcttatgtatattttcaaaataattgagggataagaaaatttgtagtcttttcggccaaacatcggtcgttggattaatctaaaggc |
28939519 |
T |
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| Q |
312 |
tcgtgtttggc |
322 |
Q |
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| T |
28939518 |
tcgtgtttggc |
28939508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 40327394 - 40327273
Alignment:
| Q |
29 |
ggacctttgagttctaaccatttgggtcctcaagggacttttattggtgtttatgatggtcatggtggagctgaagcttctcaatttgtcagcgacaatc |
128 |
Q |
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| T |
40327394 |
ggacctatgagttctgattatttgggtcctcaaggaacctttataggtgtttatgatggtcatggtggaactgcagcttctcagtttgttaatgacaatc |
40327295 |
T |
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| Q |
129 |
ttttttgcaatctcaaaagtat |
150 |
Q |
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| T |
40327294 |
tattctccaatttcaagagtat |
40327273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 73558 - 73516
Alignment:
| Q |
67 |
ttttattggtgtttatgatggtcatggtggagctgaagcttct |
109 |
Q |
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| T |
73558 |
ttttgttggtgtttatgatggtcatggtggtcctgaagcttct |
73516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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