View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_27 (Length: 315)
Name: NF19242_low_27
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38792361 - 38792128
Alignment:
| Q |
1 |
ttgatggaaatacaacatgttg-ttttttactatgcgggaatacaacctctttgtctctctttgtaggatatgaaaatcaacataatcatcatagagaca |
99 |
Q |
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| T |
38792361 |
ttgatggaaatacaacatgttggttttttactatgcgggaatacaacctctttacctctctttgtaggatatgaaaatcaacacaatcatcattg-gttt |
38792263 |
T |
|
| Q |
100 |
caa--gttgaatgatccagacatcaaaagccaagattacattgtcgttacgatgtttttagtttgaactgttgtctgattttctgcagtcacgacatgag |
197 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38792262 |
gaactgttgaatgatccagccatcaaaagccaagattacattgtcgttacgatgtttttagtttgaactgttgtctggttttctgcagtcacgacatgag |
38792163 |
T |
|
| Q |
198 |
ggtctgcatgattggttgttccggtgatgattggc |
232 |
Q |
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| T |
38792162 |
agtctgcatgattggttgttccggtgatgattggc |
38792128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 407991 - 407932
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta |
135 |
Q |
| |
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| T |
407991 |
atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta |
407932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 415951 - 416010
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta |
135 |
Q |
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| T |
415951 |
atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta |
416010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 6457759 - 6457721
Alignment:
| Q |
88 |
atcatagagacacaagttgaatgatccagacatcaaaag |
126 |
Q |
| |
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| T |
6457759 |
atcatagagacgcaagttgaatgatccagccatcaaaag |
6457721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 49962756 - 49962806
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaag |
126 |
Q |
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||||||| ||| ||| ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
49962756 |
atcaacacaataatcttagagacgcaagttgaatgatccagccatcaaaag |
49962806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 24184473 - 24184414
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta |
135 |
Q |
| |
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||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
24184473 |
atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta |
24184414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 24357806 - 24357865
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta |
135 |
Q |
| |
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||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
24357806 |
atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta |
24357865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 24345535 - 24345592
Alignment:
| Q |
76 |
atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta |
135 |
Q |
| |
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||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
24345535 |
atcaacacaatcatca--gagacataagttgaatgatccagccatcaaaagccaagatta |
24345592 |
T |
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