View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_29 (Length: 294)
Name: NF19242_low_29
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_29 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 24214479 - 24214186
Alignment:
| Q |
1 |
cacagaccagagtattcggataatccacatttgaaatatccattgcattaggcccacaaacattagacgcttcatggtctcggtttgacccatccggcaa |
100 |
Q |
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| T |
24214479 |
cacacaccagagtattcggataatccacatttgaaatatccattgcattaggcccacaaacattagacgcttcatggtctcggtttgacccatccggcaa |
24214380 |
T |
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| Q |
101 |
aaacattttccaataccaatcggttttatccatcgaacagatgggtacccgtttcaatcgaatctcagattcagttcgttcctctcctccnnnnnnnggt |
200 |
Q |
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| T |
24214379 |
aaacattttccaataccaatcggttttatccatcgaacagatgggtacccgtttcaatcgaatctcagactcagttcgttcctctcctccaaaaaaaggt |
24214280 |
T |
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| Q |
201 |
tggatcgaaaccagtccaataaccttcaaaacccgaaaatcctctaaggaaacccgagcagccacatgatgggccaagtttccacccgcactat |
294 |
Q |
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| T |
24214279 |
tggatcgaaaccagtccaataaccttcaaaacccgaaaatcctctaaggaaacccgagcagccacatgatgggccaagtttccacccgcactat |
24214186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 24228634 - 24228519
Alignment:
| Q |
15 |
ttcggataatccacatttgaaatatccattgcattaggcccacaaacattagacgcttcatggtctcggtttgacccatccggcaaaaacattttccaat |
114 |
Q |
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| T |
24228634 |
ttcgggtaatccacattcagaatatccaatgccttaggcccattaacattaaccgcttcatggtcccgatttgatccatccag---aaacatcttccaat |
24228538 |
T |
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| Q |
115 |
accaatcggttttatccat |
133 |
Q |
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| T |
24228537 |
accaatcggttttatccat |
24228519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 24204211 - 24204146
Alignment:
| Q |
21 |
taatccacatttgaaatatccattgcattaggcccacaaacattagacgcttcatggtctcggttt |
86 |
Q |
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||||||| |||| || |||||||||||| | | || |||||||||||||||||||||||||||| |
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| T |
24204211 |
taatccatgtttggaaaatccattgcatttagtcaactaacattagacgcttcatggtctcggttt |
24204146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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