View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_3 (Length: 788)
Name: NF19242_low_3
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Complemental strand, 34884943 - 34884436
Alignment:
| Q |
20 |
gcagtaacgttcagaatccgattcggcgccgaaggaagaacggcgagatagaccgtctgattggtggagacgtaaccggggaaatgaatccaacggtgga |
119 |
Q |
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| T |
34884943 |
gcagtaacgttcagaatccgattcggcgccgaaggaagagcggcgagatagaccgtctgattggtggagacgtaaccggggaaatgaatccaacggtgga |
34884844 |
T |
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| Q |
120 |
tccggagacccgttcatgatttgaaacctggttgattattaacaagtgctaattagattaattaatgagaaagttacgtgaaagtgtgattgatgaaagc |
219 |
Q |
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| T |
34884843 |
tccggagacccgttcatgatttgaaacctggttgattattaacaagtgctaattagattaattaatgagaaagttacgtgaaagtgtgattgatggaagc |
34884744 |
T |
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| Q |
220 |
taacctttgattatcgcgcgggattatgaaattgagcactnnnnnnnnnnnnnnttttccctgatacacgaacacaacacgagagaagatgacagcgatg |
319 |
Q |
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| T |
34884743 |
taacctttgattatcgcgcgggattatgaaattgagcact----agagagagagttttccctgatacacgaacacaacacgagagaagatgacagcgatg |
34884648 |
T |
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| Q |
320 |
caggggnnnnnnntgtttttagaaagagaataaaaataatattgagaatcaggtttttgtttttactcgttaataagg-nnnnnnnnncagaaaatgaga |
418 |
Q |
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| T |
34884647 |
caggggaaaaaaatgtttttagaaagagaataaaactaatattgagaatcaggtttttgtttttactcgttaataaggaaaaaaaaaacagaaaatgaga |
34884548 |
T |
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| Q |
419 |
agagaaaatattacaacgaccgtttctgc--gtgttttattttatctatctacctattttacctaccaatcaactatgctgttatacgagatataaagaa |
516 |
Q |
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| T |
34884547 |
agagaaaatattacaacgaccgtttctgcgtgtgttttattttatctatctacctattttacctaccaatcaactatgctgttatacgagatataaagga |
34884448 |
T |
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| Q |
517 |
ttaattcaaaac |
528 |
Q |
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| T |
34884447 |
ttaattcaaaac |
34884436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 668 - 735
Target Start/End: Complemental strand, 34884270 - 34884203
Alignment:
| Q |
668 |
attttccgtcaaatactaactgaaattttctcaattgttttgaaattcgaacatatatgctttcgata |
735 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34884270 |
attttccgtcatatactaactgaaattttctcaattgttttgaaattcgaacacatatgctttcgata |
34884203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 560 - 628
Target Start/End: Complemental strand, 34884334 - 34884266
Alignment:
| Q |
560 |
caacggagttatactcacgaggacttactctgagtacctattaaaactcaaaatagtctataaaatttt |
628 |
Q |
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| T |
34884334 |
caacggagttatactcacgaggacttactgtgagtatctatcaaaactcaaaatagtctataaaatttt |
34884266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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