View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_36 (Length: 249)
Name: NF19242_low_36
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 40285402 - 40285637
Alignment:
| Q |
1 |
ggatcaatagggagacacatgcggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatgcgtcgacaatgtcatgat |
100 |
Q |
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| T |
40285402 |
ggatcaatagggagacgcgtgcggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaagatgcgtcgataatgtcatgag |
40285501 |
T |
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| Q |
101 |
gaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagttgtttcttctttctttccatgga |
197 |
Q |
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| T |
40285502 |
gaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagttgtttcttctttctttccatgga |
40285601 |
T |
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| Q |
198 |
atttgttgatggtaagagtgagggtagggtatcaag |
233 |
Q |
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| T |
40285602 |
atttgttgatggtaagagtgagggtagggtatcaag |
40285637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 40457690 - 40457533
Alignment:
| Q |
79 |
gatgcgtcgacaatgtcatgatgaggagcattatc---atcacatgaaagtgcagcatgatcaccatggttcataatctttgagttatcactgatgagtt |
175 |
Q |
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| T |
40457690 |
gatgcgtcgataatgtcatgaggaggagcatcatcttcatcacatgaaagtgcagcatgatcagcatggttcatcatctttgagttatcactgatgagtt |
40457591 |
T |
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| Q |
176 |
gtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaag |
233 |
Q |
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| T |
40457590 |
gtttcttctttctttccatggaatttgttgatggtaagagtgagggtagggtatcaag |
40457533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 40457869 - 40457810
Alignment:
| Q |
23 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
82 |
Q |
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| T |
40457869 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
40457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 40280481 - 40280540
Alignment:
| Q |
23 |
ggggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
82 |
Q |
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| T |
40280481 |
ggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 40280654 - 40280712
Alignment:
| Q |
24 |
gggtgttgatggcgtgtattcagatggtaaaggcttagggagtggtggtgatgaagatg |
82 |
Q |
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| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatg |
40280712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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