View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19242_low_42 (Length: 233)
Name: NF19242_low_42
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 38940281 - 38940182
Alignment:
| Q |
105 |
gagaagaaatagcgatgacgaattaccgagaagatgttcgagctaaaacctgaaacggaacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38940281 |
gagaagaaatagcgatgacgaattaccgagaagatgttcgagctaaaacctgaaacggaacgaagattcatcagtgagtgaaaaagaaacgaagattcat |
38940182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 38940194 - 38940145
Alignment:
| Q |
163 |
aacgaagattcatcagtgagtgaaaaagaaacgaagattcatgaaaaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38940194 |
aacgaagattcatcagtgagtgaaaaagaaacgaagattcatgaaaaaga |
38940145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38940385 - 38940347
Alignment:
| Q |
1 |
tagaaaccaaaatattcatacagtatatcaagtgcagac |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38940385 |
tagaaaccaaaatattcatacagtatatcaagtgcagac |
38940347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University