View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19242_low_6 (Length: 499)
Name: NF19242_low_6
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19242_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 10 - 485
Target Start/End: Original strand, 2572889 - 2573365
Alignment:
| Q |
10 |
aatattactatgcaactttcttaatttaatggtactacatcatgcaactgtagtaagggattatacaagttttagcttttttg-gttgttgttaactctt |
108 |
Q |
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| T |
2572889 |
aatattactatgcaactttcttaatttaatggtactacatcatgcaattgtagtaaaggattatacaagttttagcttttttttgttgttgttaactatt |
2572988 |
T |
|
| Q |
109 |
cgattctcaggaaaaagagctctggtaattcggagttcgatcgcgaggtaagcaagtatagtttaatcaatacctgttttataagaaatcgaactcgaat |
208 |
Q |
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| T |
2572989 |
cgattctcaggaaaaagagctctggtaattcggagttcgatcgtgaggtaagcaagtatagtttaatcaatacctgttttatgagaaatcgaactcgaat |
2573088 |
T |
|
| Q |
209 |
tctttcaaatagtttttcatttagagtttattaacgatttaatatgtaatttcgtgtttgaactttgaattggttgatgtgtagtgtgagagcatgggag |
308 |
Q |
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| T |
2573089 |
tctttcaaacagttcttcatttagagtttattaacgatttaatatgtaattttgtgtttgaactttgaattggttgatgtgtagtgtgagagcatgggag |
2573188 |
T |
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| Q |
309 |
cagttgagaaaaagctgaaagaaatggaaatcaattatgttcgagcaagagtagaggaaggtgggattgaagtagatcagctatttttccatgacccaga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2573189 |
cagttgagaaaaagctgaaagaaatggaaatcaattatgttcgagcaagagtagaggaaggtgggattgaagtagatcagctatttttccatgacccaga |
2573288 |
T |
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| Q |
409 |
tggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgct |
485 |
Q |
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| T |
2573289 |
tggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgct |
2573365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 51845979 - 51846068
Alignment:
| Q |
378 |
aagtagatcagctatttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtg |
467 |
Q |
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|||| |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||| |
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| T |
51845979 |
aagtggatcagttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtctccctgttattcctttagctggtg |
51846068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 44555496 - 44555419
Alignment:
| Q |
392 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaa |
469 |
Q |
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| T |
44555496 |
ttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaa |
44555419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 44544854 - 44544802
Alignment:
| Q |
392 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtct |
444 |
Q |
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||||| |||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
44544854 |
ttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtct |
44544802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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