View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19242_low_9 (Length: 436)

Name: NF19242_low_9
Description: NF19242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19242_low_9
NF19242_low_9
[»] scaffold0050 (2 HSPs)
scaffold0050 (17-426)||(74487-74905)
scaffold0050 (27-101)||(74870-74945)
[»] chr2 (5 HSPs)
chr2 (117-419)||(31511174-31511484)
chr2 (239-427)||(13516157-13516345)
chr2 (305-429)||(3264130-3264253)
chr2 (385-426)||(32316069-32316110)
chr2 (379-427)||(31511105-31511153)
[»] chr3 (4 HSPs)
chr3 (117-374)||(28425751-28426016)
chr3 (158-427)||(11513227-11513496)
chr3 (248-427)||(808891-809069)
chr3 (390-424)||(19276096-19276130)
[»] chr5 (3 HSPs)
chr5 (140-395)||(26067626-26067880)
chr5 (381-427)||(21240367-21240413)
chr5 (382-422)||(6255632-6255672)
[»] chr7 (5 HSPs)
chr7 (291-415)||(18310134-18310258)
chr7 (242-391)||(4154689-4154839)
chr7 (378-426)||(779253-779301)
chr7 (378-433)||(4154622-4154677)
chr7 (383-433)||(779370-779420)
[»] scaffold0010 (1 HSPs)
scaffold0010 (380-429)||(124014-124063)
[»] chr1 (1 HSPs)
chr1 (302-370)||(23352975-23353043)


Alignment Details
Target: scaffold0050 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 74905 - 74487
Alignment:
Q  17 caaagggcgtgaagaataaaaatcctctcaagcagaggtcatctaaataacaaagggtgggaggaataaaatcctcttaagcagaagaattcgagatcag 116  Q
    ||||||||| || ||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||||||| |||||||||||||||| | |||    
T  74905 caaagggcgggaggaataaaaatcctctcaagcagaggtcgtctaaataacatagagcgggaggaataaaatcctctcaagcagaagaattcgaaaccag 74806  T
Q  117 gaagagcaacgaatattataagcaaagaggaaacaaattcaaaaccatgaagacaagtcaacataaatacgacatctcaaaataaatatcccaccaaaag 216  Q
    | |||||||||||||||||||||||| | |||||  ||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  74805 ggagagcaacgaatattataagcaaatatgaaaccgattcaaatccattaagacaagtaaacataaatacgacgtctcaaaataaatatcccaccaaaag 74706  T
Q  217 cttaa--------gaaggcgccttagagggcttgcccacataagttacata-aaaaataaagttgcagagtaccataacgccttaaagggcttgcccatg 307  Q
    |||||        |||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  | ||||    
T  74705 cttaaacagtactgaaggcgccttagacgactcgcccacataagttacatagaaaaataaagttgcagagtactataacgccttaaagggctcactcatg 74606  T
Q  308 tcatacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataattaatcactttgtcttgtc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||    
T  74605 tcatacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatactccaatatcaaaatagcgacttcataattaatcacttcgccttgtc 74506  T
Q  408 tcaagactcgtgtttgggg 426  Q
      |||||||| ||||||||    
T  74505 ctaagactcgagtttgggg 74487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 74945 - 74870
Alignment:
Q  27 gaagaataaaaatcctctcaagcagaggtcatctaaataacaaagggtgggaggaat-aaaatcctcttaagcaga 101  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||    
T  74945 gaagaataaaaatcctctcatgcagaggtcgtctaaataacaaagggcgggaggaataaaaatcctctcaagcaga 74870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 117 - 419
Target Start/End: Complemental strand, 31511484 - 31511174
Alignment:
Q  117 gaagagcaacgaatattataagcaaagaggaaacaaattcaaaaccatgaagacaagtcaacataaatacgacatctcaaaataaatatcccaccaaaag 216  Q
    ||||||||  |||||||||||| |||| ||||||| |||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||| ||||||    
T  31511484 gaagagcagtgaatattataagaaaaggggaaacagattcaaaaccattaaggcaagtcaacataaatacgatgtctcaaaataaatatcccatcaaaag 31511385  T
Q  217 cttaag--------aaggcgccttagagggcttgcccacataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgt 308  Q
    |||||         ||||| ||||||||||||  ||||| |||||||||| ||||||||||||||||||||| |||  ||   |||||||| |||||||     
T  31511384 cttaaagagtacttaaggcaccttagagggctcacccacttaagttacatcaaaaataaagttgcagagtactatagtgctacaaagggctcgcccatgc 31511285  T
Q  309 catacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataattaatcactttgtcttgtct 408  Q
    ||||||||||| ||| |||| |||||||| ||||| |||||||||||||| ||| ||||||||||| ||| || | |||| ||| ||||| | ||| ||     
T  31511284 catacaccaataaacccgccgaaggacatgtaaaaagcagatattgcccacactccaatatcgaaagagcaacgttataactaaccacttcgccttatcc 31511185  T
Q  409 caagactcgtg 419  Q
     ||||||||||    
T  31511184 aaagactcgtg 31511174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 427
Target Start/End: Complemental strand, 13516345 - 13516157
Alignment:
Q  239 cttgcccacataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgtcatacaccaatgaactcgccaaaggacata 338  Q
    ||||||||  |||||||||| || |||||||||||||| ||| ||||||||  |||||||| ||||||| ||||| | |||||||||| | | ||||||     
T  13516345 cttgcccagttaagttacatcaacaataaagttgcagaatactataacgccacaaagggctcgcccatgccatacgctaatgaactcgtccagggacatg 13516246  T
Q  339 taaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataattaatcactttgtcttgtctcaagactcgtgtttggggg 427  Q
    ||||||  || ||||||||||||| ||||||| ||  ||| || | || | ||| || || | |||||| |||||||||||||||||||    
T  13516245 taaaatttagttattgcccatactccaatatcaaaggagcaacgttattactaaccatttcgccttgtcccaagactcgtgtttggggg 13516157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 429
Target Start/End: Complemental strand, 3264253 - 3264130
Alignment:
Q  305 atgtcatacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataattaatcactttgtctt 404  Q
    |||||||||| ||||||||||||| |||||||| ||||||||| || |  | |||||| ||||||| ||| | | |||  |||||||| ||||| |||||    
T  3264253 atgtcatacaacaatgaactcgccgaaggacatgtaaaatgcaaatgtctctcatactccaatatccaaa-atcaactgtataattaaccacttcgtctt 3264155  T
Q  405 gtctcaagactcgtgtttgggggat 429  Q
    | |  ||||||||||| ||||||||    
T  3264154 gacctaagactcgtgtgtgggggat 3264130  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 32316110 - 32316069
Alignment:
Q  385 ataattaatcactttgtcttgtctcaagactcgtgtttgggg 426  Q
    |||||||||||||| | |||||| ||||||||||||||||||    
T  32316110 ataattaatcacttcgccttgtcccaagactcgtgtttgggg 32316069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 31511153 - 31511105
Alignment:
Q  379 gacttcataattaatcactttgtcttgtctcaagactcgtgtttggggg 427  Q
    |||||||||||||||||||  | |||||| ||||||||||| |||||||    
T  31511153 gacttcataattaatcactccgccttgtcccaagactcgtgcttggggg 31511105  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 117 - 374
Target Start/End: Original strand, 28425751 - 28426016
Alignment:
Q  117 gaagagcaacgaatattataagcaaagaggaaacaaattcaaaaccatgaagacaagtcaacataaatacgacatctcaaaataaatatcccaccaaaag 216  Q
    ||||| |||| ||||||||||| |||| | ||||| |||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||| ||||||    
T  28425751 gaagaacaacaaatattataagaaaagggaaaacagattcaaaaccattaaggcaagtcaacataaatacgacgtctcaaaatagatatcccatcaaaag 28425850  T
Q  217 cttaa--------gaaggcgccttagagggcttgcccacataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgt 308  Q
    |||||        |||||||| |||||||||| || ||| |||||| ||| ||||||||||||||| ||||  ||| | ||  |||||||| |||||||     
T  28425851 cttaaagaatactgaaggcgctttagagggctagctcacttaagttgcatcaaaaataaagttgcaaagtataatagctccacaaagggctcgcccatgc 28425950  T
Q  309 catacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatcgaaa 374  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||| |||  ||||||||||    
T  28425951 catacaccaatgaactcgctgaaggacatgtaaaatgcagatattgcccacactcaaatatcgaaa 28426016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 158 - 427
Target Start/End: Original strand, 11513227 - 11513496
Alignment:
Q  158 aaaccatgaagacaagtcaacataaatacgacatctcaaaataaatatcccaccaaaagcttaa--------gaaggcgccttagagggcttgcccacat 249  Q
    ||||||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||        |||||||||||||| ||||  ||||| |    
T  11513227 aaaccattaaggcaagtcaacatatatacgacgtttcaaaataaatatcccaccaaaagcttaaagcgtacggaaggcgccttagaaggctcacccactt 11513326  T
Q  250 aagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgtcatacaccaatgaactcgccaaaggacatataaaatgcaga 349  Q
     | |||||| |||       ||| |||||||  || ||||  |||||||  ||||||| |||||||||||||||||||| || |||||||||||||||||    
T  11513327 caattacatcaaa-------ttgtagagtactgtagcgccacaaagggcccgcccatgccatacaccaatgaactcgccgaacgacatataaaatgcaga 11513419  T
Q  350 tattgcccatacttc-aatatcgaaatagcgacttcataattaatcactttgtcttgtctcaagactcgtgtttggggg 427  Q
    ||||||||||| | | |||||||| ||  |||||||||||||||||||||   |||||| ||||||||||| |||||||    
T  11513420 tattgcccatattccaaatatcgacat--cgacttcataattaatcacttcaccttgtcccaagactcgtgcttggggg 11513496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 427
Target Start/End: Original strand, 808891 - 809069
Alignment:
Q  248 ataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgtcatacaccaatgaactcgccaaaggacatataaaatgca 347  Q
    |||| |||||| || ||| || || |||||||| ||| ||||  |||||||||||||||  |||||||| |||||||| || ||| |||| | |||||||    
T  808891 ataaattacatcaacaatgaaattacagagtactatatcgccaaaaagggcttgcccataccatacacccatgaactctcctaagaacatgt-aaatgca 808989  T
Q  348 gatattgcccatacttcaatatcgaaatagcgacttcataattaatcactttgtcttgtctcaagactcgtgtttggggg 427  Q
    |||||  |||||  | | ||||| ||| ||| || | |||||||||||||| | |||||| ||||||||||  |||||||    
T  808990 gatatcacccatcttccgatatcaaaagagcaacattataattaatcacttcgccttgtcccaagactcgttcttggggg 809069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 19276096 - 19276130
Alignment:
Q  390 taatcactttgtcttgtctcaagactcgtgtttgg 424  Q
    |||||||||||||||||| ||||||||||||||||    
T  19276096 taatcactttgtcttgtcccaagactcgtgtttgg 19276130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 395
Target Start/End: Complemental strand, 26067880 - 26067626
Alignment:
Q  140 aaagaggaaacaaattcaaaaccatgaagacaagtcaacataaatacgacatctcaaaataaatatcccaccaaaagcttaa--------gaaggcgcct 231  Q
    |||| ||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| |||||        |||||| |||    
T  26067880 aaaggggaaacatattcaaaaccattaagacaagtcaacataaatacgaagtctcaaaataaatatcccaccaaaatcttaaagagtacggaaggcacct 26067781  T
Q  232 tagagggcttgcccacataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgtcatacaccaatgaactcgccaaa 331  Q
    |||| |||| |||||| | | |||||| |||       ||  |||||||  || ||||  |||||| | ||| ||| |||||||||||||| ||| | ||    
T  26067780 tagaaggctcgcccacttcaattacatcaaa-------ttatagagtactgtagcgccacaaaggggtcgcctatgccatacaccaatgaagtcgtcgaa 26067688  T
Q  332 ggacatataaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataattaatca 395  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||  ||||||||||||||||||    
T  26067687 ggacatataaactgcagatgtagtccatactccaatatcgaaat--cgacttcataattaatca 26067626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 21240367 - 21240413
Alignment:
Q  381 cttcataattaatcactttgtcttgtctcaagactcgtgtttggggg 427  Q
    |||||||||||||||||  |||||||  |||||||||||||||||||    
T  21240367 cttcataattaatcactccgtcttgttccaagactcgtgtttggggg 21240413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 6255632 - 6255672
Alignment:
Q  382 ttcataattaatcactttgtcttgtctcaagactcgtgttt 422  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  6255632 ttcataattaatcacttcgtcttgtgccaagactcgtgttt 6255672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 18310134 - 18310258
Alignment:
Q  291 taaagggcttgcccatgtcatacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatcgaaatagcgacttcataatt 390  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||| ||| |  | |||| |    
T  18310134 taaagggctcgcccatgccatacaccaatgaactcgccaaaggacatgtaaaatgcagttattggccatactgcaatatcgaaagagcaatgttataact 18310233  T
Q  391 aatcactttgtcttgtctcaagact 415  Q
    || ||||| | |||||| |||||||    
T  18310234 aaccacttcgccttgtcccaagact 18310258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 4154839 - 4154689
Alignment:
Q  242 gcccacataagttacataaaaaataaagttgcagagtaccataacgccttaaagggcttgcccatgtcatacaccaatgaactcgccaaaggacatataa 341  Q
    |||||| ||| |||||| ||||||||||||||||||||   || ||||  |||||||||||||||  |||||||  ||||| ||||| ||||| ||||||    
T  4154839 gcccacttaaattacatcaaaaataaagttgcagagtagtgtagcgccacaaagggcttgcccataacatacactgatgaattcgccgaaggatatataa 4154740  T
Q  342 aatgcagatattgcccatacttcaatatcgaaa-tagcgacttcataatta 391  Q
    |||||||||||| |||||| | ||||||| ||| || ||||||||||||||    
T  4154739 aatgcagatatttcccatattccaatatcaaaactatcgacttcataatta 4154689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 779301 - 779253
Alignment:
Q  378 cgacttcataattaatcactttgtcttgtctcaagactcgtgtttgggg 426  Q
    ||||||||||||||||||||| | |||||| ||||||||||| ||||||    
T  779301 cgacttcataattaatcacttcgccttgtcccaagactcgtgcttgggg 779253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 4154677 - 4154622
Alignment:
Q  378 cgacttcataattaatcactttgtcttgtctcaagactcgtgtttgggggattgtg 433  Q
    ||||||||||||||||||  | |||||||| ||||||||||| |||||||| ||||    
T  4154677 cgacttcataattaatcatgtcgtcttgtcccaagactcgtgcttgggggactgtg 4154622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 433
Target Start/End: Complemental strand, 779420 - 779370
Alignment:
Q  383 tcataattaatcactttgtcttgtctcaagactcgtgtttgggggattgtg 433  Q
    |||||||||||||||||| |||||  ||||||||||| ||||||| |||||    
T  779420 tcataattaatcactttgccttgttccaagactcgtgcttggggggttgtg 779370  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 124063 - 124014
Alignment:
Q  380 acttcataattaatcactttgtcttgtctcaagactcgtgtttgggggat 429  Q
    ||||||||||||||||||| | ||| || ||||||||||| |||||||||    
T  124063 acttcataattaatcacttcgccttatcccaagactcgtgcttgggggat 124014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 23352975 - 23353043
Alignment:
Q  302 cccatgtcatacaccaatgaactcgccaaaggacatataaaatgcagatattgcccatacttcaatatc 370  Q
    |||||| |||||||||||||||||||| ||||   | || ||| ||||||| ||||||||| |||||||    
T  23352975 cccatgccatacaccaatgaactcgccgaaggtattgtacaatacagatatcgcccatactccaatatc 23353043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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