View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19243_high_1 (Length: 739)

Name: NF19243_high_1
Description: NF19243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19243_high_1
NF19243_high_1
[»] chr3 (9 HSPs)
chr3 (8-723)||(35950863-35951578)
chr3 (8-382)||(35971269-35971639)
chr3 (89-348)||(35978406-35978669)
chr3 (110-278)||(35955820-35955988)
chr3 (57-236)||(35968449-35968627)
chr3 (412-498)||(37334976-37335062)
chr3 (549-609)||(3845208-3845268)
chr3 (408-467)||(3776610-3776669)
chr3 (551-596)||(1441479-1441524)
[»] chr7 (10 HSPs)
chr7 (376-468)||(29829275-29829367)
chr7 (397-479)||(45557441-45557523)
chr7 (551-596)||(12306676-12306721)
chr7 (412-560)||(21435940-21436089)
chr7 (386-467)||(45823259-45823340)
chr7 (390-489)||(40561678-40561777)
chr7 (551-593)||(12306922-12306964)
chr7 (548-594)||(17111819-17111865)
chr7 (551-593)||(45004965-45005007)
chr7 (551-593)||(48158836-48158878)
[»] chr4 (7 HSPs)
chr4 (551-597)||(25318988-25319034)
chr4 (390-496)||(33843770-33843876)
chr4 (551-592)||(33560669-33560710)
chr4 (482-586)||(28178857-28178961)
chr4 (541-593)||(29728947-29728999)
chr4 (541-596)||(42152969-42153024)
chr4 (548-593)||(1616354-1616399)
[»] chr5 (9 HSPs)
chr5 (519-596)||(10859887-10859964)
chr5 (551-596)||(29922836-29922881)
chr5 (531-585)||(38592183-38592237)
chr5 (386-495)||(34250270-34250378)
chr5 (553-609)||(10161755-10161811)
chr5 (554-593)||(12208944-12208983)
chr5 (551-609)||(34250449-34250507)
chr5 (394-479)||(36927611-36927696)
chr5 (392-445)||(38688733-38688786)
[»] chr1 (11 HSPs)
chr1 (435-595)||(18325073-18325233)
chr1 (549-596)||(47322002-47322049)
chr1 (387-445)||(6932101-6932159)
chr1 (553-596)||(17759879-17759922)
chr1 (551-593)||(15452431-15452473)
chr1 (551-593)||(32088671-32088713)
chr1 (551-609)||(37131863-37131921)
chr1 (432-489)||(213243-213300)
chr1 (551-596)||(28083986-28084031)
chr1 (387-420)||(43541597-43541630)
chr1 (551-596)||(49079312-49079357)
[»] chr8 (3 HSPs)
chr8 (551-597)||(4336342-4336388)
chr8 (554-593)||(13929808-13929847)
chr8 (549-596)||(18355926-18355973)
[»] chr6 (5 HSPs)
chr6 (554-596)||(2002566-2002608)
chr6 (548-596)||(6896027-6896075)
chr6 (555-597)||(31812250-31812292)
chr6 (551-593)||(33136581-33136623)
chr6 (551-596)||(26550461-26550506)
[»] chr2 (8 HSPs)
chr2 (410-463)||(488645-488698)
chr2 (410-495)||(4894097-4894182)
chr2 (551-596)||(15928532-15928577)
chr2 (448-495)||(11511013-11511060)
chr2 (435-557)||(6767673-6767795)
chr2 (394-479)||(1976788-1976873)
chr2 (431-480)||(36893449-36893498)
chr2 (531-596)||(43501085-43501149)
[»] scaffold0168 (1 HSPs)
scaffold0168 (549-609)||(31755-31815)


Alignment Details
Target: chr3 (Bit Score: 668; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Complemental strand, 35951578 - 35950863
Alignment:
Q  8 gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35951578 gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataaa 35951479  T
Q  108 gtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattc 207  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  35951478 gtgaaagaagttgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagcttcaactttctcttttgaaccatattc 35951379  T
Q  208 atctgttggtattgaaaagcctagatgaagatcacgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctacttttttcta 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35951378 atctgttggtattgaaaagcctagatgaagatcatgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctactttttccta 35951279  T
Q  308 taatcatattgttttccttgtcctagtcattgctaggcagaagagtaaaagggaaaatatgcatgtgggtttggtccaacggtgacaaaaattgattatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35951278 taatcatattgttttccttgtcctagtcattgctaggcagaagagtaaaagcgaaaatatgcatgtgggtttggtccaacggtgacaaaaattgattatg 35951179  T
Q  408 aatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaattcaatgccaaaac 507  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35951178 aatgaattgattccgactaaagttgaattgaatgtaaagggatttatgtttagatacattcgtataatagtggcttgaacaaaaaattcaatgccaaaac 35951079  T
Q  508 tcaattgtgggggcaaaagcgcaaaattctagtttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaa 607  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35951078 tcaattgtaggggcaaaagcgcaaaattctagtttcaaattagaatcaattctactcgagaacaaccaaacctgtcaaactcaattctagtcatctagaa 35950979  T
Q  608 tccatctctcctcgttcaaaaatggaatcaaacacacacaagaagactttctaaaaatgtgattctaaaatagagaaaattatgcttaattccaattcaa 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35950978 tccatctctcctcgttcaaaaatggaatcaaacacacacaagaagactttctaaaaatgtgattctaaaatacagaaaattatgcttaattccaattcaa 35950879  T
Q  708 taacaggattctatgt 723  Q
    ||||||||||||||||    
T  35950878 taacaggattctatgt 35950863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 35971639 - 35971269
Alignment:
Q  8 gattattcttgttagataatgttgaaataaaaaaggaaagtaatcacatgaagaatagtaacaaaaatactaaatattagcaaacacattagtgaataca 107  Q
    ||||||| ||||||||||||||||||||| || || ||||| |||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| |    
T  35971639 gattattgttgttagataatgttgaaatagaacagaaaagtgatcacatgaataataataacaaaaatattaaatatttgcaaacacattagtgaataaa 35971540  T
Q  108 gtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattc 207  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| || ||||||||||| ||||||  ||  | ||||||||   ||||||||||||||    
T  35971539 gtgaaagaaattgtttactagttataataacttgagattgtgcagaaactggactctctttaggtttaatatcttcaactttcgtctttgaaccatattc 35971440  T
Q  208 atctgttggtattgaaaagcctagatgaagatcacgaaccacaaacattagagtaacattgtatgtaacctgtgaagttgatgtaacctacttttttcta 307  Q
    | |||||||   |||| |||||||||| | |||| |||||||| |||||||||| | |||||||||||  |||||| |||||||||||||||  ||  ||    
T  35971439 agctgttgg---tgaagagcctagatggacatcatgaaccacacacattagagtgaaattgtatgtaaaatgtgaaattgatgtaacctactacttcata 35971343  T
Q  308 taatcatattgttttccttgtcctagtcattgctaggcagaagagtaaaagggaaaatatgcatgtgggtttggt 382  Q
    ||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| |||| |||| | |||||||    
T  35971342 taatcatattgttttcctt-ttctagtcattcctaggcacaagagtaaaagggaagatattcatgcgtgtttggt 35971269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 89 - 348
Target Start/End: Complemental strand, 35978669 - 35978406
Alignment:
Q  89 aaacacattagtgaatacagtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactt 188  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||  |||| | ||| ||||||  |||| ||||| || ||| ||||||| || ||||||||    
T  35978669 aaacacattagtgaataaagtaaaagaaattgtttaccacttaaaatatcaggaaattgtgatggaactggacacttttgtggtttggcagctccaactt 35978570  T
Q  189 tctcttttgaaccatattcatctgttggtattgaaaagcctagatgaaga--tcacgaaccacaaacattagagtaacattgtatgtaacctgtgaagtt 286  Q
    |||||||||| |||||||||| |||||| |||||| |||||| ||   ||  ||| |||||| ||| ||||||| || ||||||||||||||||||| ||    
T  35978569 tctcttttgacccatattcatttgttggcattgaagagcctatatattgatgtcatgaaccataaatattagagaaaaattgtatgtaacctgtgaattt 35978470  T
Q  287 gatgtaacctacttttttctataatcatattgttttccttgtcct--agtcattgctaggcaga 348  Q
    ||||||||||| |  || ||||||||| |||||||||||| ||||  |||||||||||||||||    
T  35978469 gatgtaacctagtagttcctataatcaaattgttttccttatccttcagtcattgctaggcaga 35978406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 35955988 - 35955820
Alignment:
Q  110 gaaagaaattgtttaccagttctaataaccggagattgtgcaggaagtggactctcttgaggtttggtagttccaactttctcttttgaaccatattcat 209  Q
    |||||||||||||||||| || ||||||| |||||||||    ||| ||||||||| |||||||||  || |  ||||| ||||||||||||||  ||||    
T  35955988 gaaagaaattgtttaccacttttaataactggagattgttgtagaactggactctcctgaggtttgacagctttaacttcctcttttgaaccatgctcat 35955889  T
Q  210 ctgttggtattgaaaagcctagatgaagatcacgaaccacaaacattagagtaacattgtatgtaacct 278  Q
     ||||||| ||||| | |||| ||| | |||| ||||||||||||||||||||| ||||||||||||||    
T  35955888 ttgttggttttgaagaacctaaatggacatcatgaaccacaaacattagagtaaaattgtatgtaacct 35955820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 35968627 - 35968449
Alignment:
Q  57 gaagaatagtaacaaaaatactaaatattagcaaacacattagtgaatacagtgaaagaaattgtttaccagttctaataaccggagattgtgcaggaag 156  Q
    ||||||||||||| ||| ||   || ||| ||||| |||||||||| || |||||||||||| |||||||| || |||||   ||| ||| ||  ||||     
T  35968627 gaagaatagtaaccaaattatcgaagatttgcaaaaacattagtgactaaagtgaaagaaat-gtttaccacttataatatgtggaaattctgatggaac 35968529  T
Q  157 tggactctcttgaggtttggtagttccaactttctcttttgaaccatattcatctgttggtattgaaaagcctagatgaa 236  Q
    ||||  || ||||||||||| ||   |||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||    
T  35968528 tggatacttttgaggtttggcagcatcaactttctcttctgaactatattcatttgttggtattgaagagcctagatgaa 35968449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 498
Target Start/End: Original strand, 37334976 - 37335062
Alignment:
Q  412 aattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaattcaa 498  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||| |  |||||||| ||||||| ||  ||||||||  |||||||    
T  37334976 aattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaa 37335062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 3845208 - 3845268
Alignment:
Q  549 agaatcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaatc 609  Q
    ||||||||||||||| |||| ||| ||||||||||||| |||||||||  | |||||||||    
T  3845208 agaatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatc 3845268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 3776669 - 3776610
Alignment:
Q  408 aatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacatt 467  Q
    ||||||||||||| | ||||| |||| |||||||||||| |||||||| || ||||||||    
T  3776669 aatgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacatt 3776610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 1441479 - 1441524
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||| | |  ||||||||||||||||||||||||||    
T  1441479 aatcaattctactcaaaagaaaccaaacatgtcaaactcaattcta 1441524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 29829275 - 29829367
Alignment:
Q  376 gtttggtccaacggtgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattc 468  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||| | |||||  ||| |||||||||||| ||||||||||| |||||||||    
T  29829275 gtttggtcctacggtgataaaaattgattctgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggatacattc 29829367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 479
Target Start/End: Complemental strand, 45557523 - 45557441
Alignment:
Q  397 aattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtg 479  Q
    |||||||| ||||||||||||||| |||||||  ||| ||||| |||||| ||||| ||||| ||||||||| | ||||||||    
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtg 45557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 596
Target Start/End: Complemental strand, 12306721 - 12306676
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||    
T  12306721 aatcaattctacttgagagcaaccaaacatgtcaaaatcaattcta 12306676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 560
Target Start/End: Original strand, 21435940 - 21436089
Alignment:
Q  412 aattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaattcaatgccaaaactcaa 511  Q
    ||||||||  ||||||  |||| ||||||| |||| ||||||||||| ||| | ||| |  |||||||| |||||||| || |||||  | |||| ||||    
T  21435940 aattgattatgactaacattgagttgaatgcaaagtgatttatgtttggatgccttcatggaaaagtggattgaacaataacttcaaacctaaaattcaa 21436039  T
Q  512 ttgtgggggcaaaagc-gcaaaattctagtttcaaattagaatcaattct 560  Q
    | || | |||||||||  ||||||||||| ||||| ||| ||||||||||    
T  21436040 tggtagaggcaaaagctccaaaattctagcttcaagttaaaatcaattct 21436089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 467
Target Start/End: Complemental strand, 45823340 - 45823259
Alignment:
Q  386 acggtgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacatt 467  Q
    ||||||||||||||||||| ||| |||||||||| |||  |||  ||| ||||||| || | ||||||||||| ||||||||    
T  45823340 acggtgacaaaaattgattttgattgaattgatttcgatcaaaagtgagttgaatgaaatgtgatttatgtttggatacatt 45823259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 40561678 - 40561777
Alignment:
Q  390 tgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaa 489  Q
    |||||||| |||||| ||| |||||||||||     ||| |||| ||||| |||||| ||||||||||| ||||||||| | ||||||||  ||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Complemental strand, 12306964 - 12306922
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    |||||||||||||| ||| ||||||||||||||||| ||||||    
T  12306964 aatcaattctactcaagagcaaccaaacatgtcaaaatcaatt 12306922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 17111865 - 17111819
Alignment:
Q  548 tagaatcaattctactcgagaacaaccaaacatgtcaaactcaattc 594  Q
    ||||||||||||||||||| | ||||||||||||||| | |||||||    
T  17111865 tagaatcaattctactcgaaagcaaccaaacatgtcagaatcaattc 17111819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Complemental strand, 45005007 - 45004965
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    ||||||||||| |||||| ||||||||||||||||| ||||||    
T  45005007 aatcaattctattcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Complemental strand, 48158878 - 48158836
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||    
T  48158878 aatcaattttactcgagagcaaccaaacatgtcaaaatcaatt 48158836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 25319034 - 25318988
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattctag 597  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  25319034 aatcaattctactcgagagcaaccaaacatgtcaaaatcaattctag 25318988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 496
Target Start/End: Complemental strand, 33843876 - 33843770
Alignment:
Q  390 tgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaa 489  Q
    ||||||||||||||| ||| ||||||||||| | |||||  ||| ||| |||||||| ||||||||||| |||| |||| | ||| ||||  ||||||||    
T  33843876 tgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaa 33843777  T
Q  490 aaaattc 496  Q
     ||||||    
T  33843776 taaattc 33843770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 33560669 - 33560710
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaat 592  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  33560669 aatcaattctactcgagagcaaccaaacatgtcaaaatcaat 33560710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 586
Target Start/End: Original strand, 28178857 - 28178961
Alignment:
Q  482 ttgaacaaaaaattcaatgccaaaactcaattgtgggggcaaaagcgcaaaattctagtttcaaattagaatcaattctactcgagaacaaccaaacatg 581  Q
    |||||||| ||||| || || |||| |||||||| | ||| ||| | | |||| |||| |||||||||||||||||| |||| || ||||  ||||||||    
T  28178857 ttgaacaataaatttaaggctaaaattcaattgtagtggcgaaaactccaaatactagattcaaattagaatcaattttacttgaaaacattcaaacatg 28178956  T
Q  582 tcaaa 586  Q
    |||||    
T  28178957 tcaaa 28178961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 593
Target Start/End: Complemental strand, 29728999 - 29728947
Alignment:
Q  541 ttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    ||||| ||| |||||||||||||||||| ||||||||| ||||||| ||||||    
T  29728999 ttcaagttataatcaattctactcgagagcaaccaaacttgtcaaaatcaatt 29728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 596
Target Start/End: Original strand, 42152969 - 42153024
Alignment:
Q  541 ttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||| | |||||||    
T  42152969 ttcaaattggaatcaattctactcaagagcaatcaaacatgtcaaaataaattcta 42153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 1616399 - 1616354
Alignment:
Q  548 tagaatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    ||||||||||||||||||| ||||||||| ||||||| | ||||||    
T  1616399 tagaatcaattctactcgataacaaccaatcatgtcagaatcaatt 1616354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 596
Target Start/End: Original strand, 10859887 - 10859964
Alignment:
Q  519 ggcaaaagcgcaaaattctagtttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||| | ||||||||| ||||| |||||||||||||||| ||||||||  |||||| |||||| ||| |||||    
T  10859887 ggcaaaagctccaaattctagcttcaagttagaatcaattctacccgagaacattcaaacaggtcaaaatcatttcta 10859964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 596
Target Start/End: Complemental strand, 29922881 - 29922836
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  29922881 aatcaattctgctcgagaacaaccaaacatgtcaaaatcaattcta 29922836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 585
Target Start/End: Complemental strand, 38592237 - 38592183
Alignment:
Q  531 aaattctagtttcaaattagaatcaattctactcgagaacaaccaaacatgtcaa 585  Q
    ||||||| | ||||||||||||||||||||||| |||| ||||||||||| ||||    
T  38592237 aaattctggcttcaaattagaatcaattctacttgagagcaaccaaacatatcaa 38592183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 495
Target Start/End: Original strand, 34250270 - 34250378
Alignment:
Q  386 acggtgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttga 485  Q
    ||||||| ||||||||||| ||| ||||||||||  ||||| | |||| |||||  ||||| ||||||||||| || |||||| || ||||||   ||||    
T  34250270 acggtgagaaaaattgattttgagtgaattgattttgactataattgagttgaagctaaagtgatttatgtttggaaacattcata-aaaagtaagttga 34250368  T
Q  486 acaaaaaatt 495  Q
    ||||||||||    
T  34250369 acaaaaaatt 34250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 609
Target Start/End: Complemental strand, 10161811 - 10161755
Alignment:
Q  553 tcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaatc 609  Q
    ||||||||| |||||||||| ||||||||||||  |||||||||  |||||||||||    
T  10161811 tcaattctattcgagaacaatcaaacatgtcaagatcaattctacacatctagaatc 10161755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 593
Target Start/End: Original strand, 12208944 - 12208983
Alignment:
Q  554 caattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  12208944 caattctactcgagaacatccaaacatgtcaaaatcaatt 12208983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 609
Target Start/End: Original strand, 34250449 - 34250507
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaatc 609  Q
    |||||||||||||| |||  ||||||||||||||||  ||||||||  |||||||||||    
T  34250449 aatcaattctactctagagaaaccaaacatgtcaaaaacaattctacacatctagaatc 34250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 36927611 - 36927696
Alignment:
Q  394 aaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtg 479  Q
    ||||||||||| ||| ||||||||||| |||| || | ||  |||  |||||| ||||||||||| ||||||||| | ||||||||    
T  36927611 aaaaattgattttgactgaattgattctgactgaattagagatgatggtaaagtgatttatgtttggatacattcctgtaaaagtg 36927696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 38688786 - 38688733
Alignment:
Q  392 acaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaa 445  Q
    ||||||||||||| ||||| ||||||||   |||||| ||||||||||||||||    
T  38688786 acaaaaattgattttgaataaattgattttaactaaaattgaattgaatgtaaa 38688733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 595
Target Start/End: Original strand, 18325073 - 18325233
Alignment:
Q  435 ttgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaattcaatgccaaaactcaattgtgggggcaaaagcgcaaaat 534  Q
    |||||| ||||| ||||||||| | ||||||||| | ||||||||| ||||| || ||||   | |  |||| |||||||| |   ||||| | |  |||    
T  18325073 ttgaatataaagtgatttatgtatggatacattcatgtaaaagtgggttgaataataaatctgaggataaaaatcaattgtagaaacaaaaactcctaat 18325172  T
Q  535 tctagtttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaattct 595  Q
    |||  |||||| ||| ||||||||||||||||||| | |||||||||||||| ||||||||    
T  18325173 tctgatttcaagttaaaatcaattctactcgagaaaatccaaacatgtcaaaatcaattct 18325233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 47322002 - 47322049
Alignment:
Q  549 agaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||||||| |||||| |||||||||||| |||||||||    
T  47322002 agaatcaattctactcgacaacaacaaaacatgtcaaaatcaattcta 47322049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 6932101 - 6932159
Alignment:
Q  387 cggtgacaaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaa 445  Q
    ||||||||||| |||||| ||||||||||||||| |||||||  ||| |||||||||||    
T  6932101 cggtgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaa 6932159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 596
Target Start/End: Complemental strand, 17759922 - 17759879
Alignment:
Q  553 tcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||||||||||| ||| |||||||||||| |||||||||    
T  17759922 tcaattctactcgagaataacgaaacatgtcaaaatcaattcta 17759879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Complemental strand, 15452473 - 15452431
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||    
T  15452473 aatcaattctactcgagaacatccaaagatgtcaaaatcaatt 15452431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Original strand, 32088671 - 32088713
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||    
T  32088671 aatcaattctacttgagagcaaccaaacatgtcaaaatcaatt 32088713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 37131921 - 37131863
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaatc 609  Q
    |||||| ||||||||||| |||||||||||| |||| |||||||||  | |||||||||    
T  37131921 aatcaaatctactcgagagcaaccaaacatgccaaaatcaattctatacctctagaatc 37131863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 213243 - 213300
Alignment:
Q  432 gaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaa 489  Q
    ||||||||||||||| ||||||||||| ||||||| | | ||||||||  ||||||||    
T  213243 gaattgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 28083986 - 28084031
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||||| |||||||||| |||||| | |||||||||    
T  28083986 aatcaattctactcgaaaacaaccaaatatgtcagaatcaattcta 28084031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 43541597 - 43541630
Alignment:
Q  387 cggtgacaaaaattgattatgaatgaattgattc 420  Q
    |||||||||||||||||| |||||||||||||||    
T  43541597 cggtgacaaaaattgattctgaatgaattgattc 43541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 49079312 - 49079357
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||| |||| |||||||||||||||| |||| ||||    
T  49079312 aatcaattctactctagaagaaccaaacatgtcaaaatcaactcta 49079357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 4336388 - 4336342
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattctag 597  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  4336388 aatcaattatactcgagaccaaccaaacatgtcaaaatcaattctag 4336342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 593
Target Start/End: Original strand, 13929808 - 13929847
Alignment:
Q  554 caattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  13929808 caattctactcgagaacatccaaacatgtcaaaatcaatt 13929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 18355926 - 18355973
Alignment:
Q  549 agaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||||||| ||||| || |||||||||| |||||||||    
T  18355926 agaatcaattctactcgaaaacaatcatacatgtcaaaatcaattcta 18355973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 2002566 - 2002608
Alignment:
Q  554 caattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  2002566 caattctactcgaaaacaaccaaacatgtcaaaatcaattcta 2002608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 596
Target Start/End: Original strand, 6896027 - 6896075
Alignment:
Q  548 tagaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||||| ||||||| ||||||||||||||||| | |||||||||    
T  6896027 tagaatcaattgtactcgacaacaaccaaacatgtcataatcaattcta 6896075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 597
Target Start/End: Complemental strand, 31812292 - 31812250
Alignment:
Q  555 aattctactcgagaacaaccaaacatgtcaaactcaattctag 597  Q
    ||||||||||||  |||||||||||||||||| ||||||||||    
T  31812292 aattctactcgactacaaccaaacatgtcaaaatcaattctag 31812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 593
Target Start/End: Original strand, 33136581 - 33136623
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaatt 593  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||    
T  33136581 aatcaattatactcgagagcaaccaaacatgtcaaaatcaatt 33136623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 596
Target Start/End: Complemental strand, 26550506 - 26550461
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    ||||||||||| | ||| |||||||||||||||||| |||||||||    
T  26550506 aatcaattctagttgagtacaaccaaacatgtcaaaatcaattcta 26550461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 488698 - 488645
Alignment:
Q  410 tgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagata 463  Q
    ||||||||||||| |||||||||| ||||| |||||| ||||||||||| ||||    
T  488698 tgaattgattccggctaaagttgatttgaaggtaaagtgatttatgttttgata 488645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 495
Target Start/End: Original strand, 4894097 - 4894182
Alignment:
Q  410 tgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaatt 495  Q
    |||||||||||   ||||| || | ||||| |||||| ||||||||||||||||||||| | |||||||| |||||| || |||||    
T  4894097 tgaattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatt 4894182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 15928532 - 15928577
Alignment:
Q  551 aatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||||||||||||| | ||||||||||||||||||| |||||||||    
T  15928532 aatcaattctactcaacaacaaccaaacatgtcaaaatcaattcta 15928577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 495
Target Start/End: Complemental strand, 11511060 - 11511013
Alignment:
Q  448 gatttatgtttagatacattcgtataaaagtggcttgaacaaaaaatt 495  Q
    ||||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  11511060 gatttatgtttagctacattcatataaaagtgggttgaacaataaatt 11511013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 557
Target Start/End: Complemental strand, 6767795 - 6767673
Alignment:
Q  435 ttgaatgtaaagagatttatgtttagatacattcgtataaaagtggcttgaacaaaaaattcaatgccaaaactcaattgtgggggcaaaagcgcaaaat 534  Q
    |||||||||||| |||||| ||||| |||||| | | ||| || || || ||||| |||||  | || |||| |||||||| |  |||||||| | ||||    
T  6767795 ttgaatgtaaagtgatttacgtttatatacatccatgtaagagagggttaaacaacaaatttgaagctaaaattcaattgtagaagcaaaagctccaaat 6767696  T
Q  535 tctagtttcaaattagaatcaat 557  Q
    ||||| ||||| |||||||||||    
T  6767695 tctagcttcaagttagaatcaat 6767673  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 1976788 - 1976873
Alignment:
Q  394 aaaaattgattatgaatgaattgattccgactaaagttgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtg 479  Q
    |||||||| || ||| ||||||||||| | ||| | |||| ||||| |||||| || |||||||| ||||||||| | ||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtg 1976873  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 36893449 - 36893498
Alignment:
Q  431 tgaattgaatgtaaagagatttatgtttagatacattcgtataaaagtgg 480  Q
    ||||||||| |||||  ||||| ||||||| |||||||||||||||||||    
T  36893449 tgaattgaaagtaaaatgatttgtgtttagttacattcgtataaaagtgg 36893498  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 596
Target Start/End: Complemental strand, 43501149 - 43501085
Alignment:
Q  531 aaattctagtttcaaattagaatcaattctactcgagaacaaccaaacatgtcaaactcaattcta 596  Q
    |||| |||||||||| | ||||||||||||||| || | ||||||||||||||| | |||||||||    
T  43501149 aaatcctagtttcaagt-agaatcaattctacttgaaagcaaccaaacatgtcagaatcaattcta 43501085  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 609
Target Start/End: Complemental strand, 31815 - 31755
Alignment:
Q  549 agaatcaattctactcgagaacaaccaaacatgtcaaactcaattctagtcatctagaatc 609  Q
    |||||||||| ||||||| ||||||||||||||||| | |||||||||  | |||||||||    
T  31815 agaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatc 31755  T

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