View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19243_high_5 (Length: 250)

Name: NF19243_high_5
Description: NF19243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19243_high_5
NF19243_high_5
[»] chr1 (7 HSPs)
chr1 (22-249)||(39923137-39923363)
chr1 (13-136)||(47024310-47024434)
chr1 (64-140)||(33016375-33016452)
chr1 (87-139)||(48379474-48379526)
chr1 (87-146)||(8259515-8259574)
chr1 (85-141)||(20381266-20381322)
chr1 (91-143)||(25389763-25389815)
[»] chr6 (5 HSPs)
chr6 (56-144)||(521158-521247)
chr6 (87-144)||(20969809-20969866)
chr6 (64-143)||(13185445-13185524)
chr6 (20-141)||(15135017-15135140)
chr6 (87-143)||(32183771-32183827)
[»] chr7 (6 HSPs)
chr7 (22-119)||(27164157-27164255)
chr7 (87-148)||(12287071-12287132)
chr7 (92-141)||(47066133-47066182)
chr7 (64-136)||(16706691-16706763)
chr7 (64-136)||(17680927-17680999)
chr7 (13-118)||(34519417-34519523)
[»] chr2 (4 HSPs)
chr2 (64-143)||(9548460-9548539)
chr2 (68-141)||(9032729-9032803)
chr2 (87-141)||(25322807-25322861)
chr2 (87-143)||(840330-840386)
[»] chr4 (9 HSPs)
chr4 (22-143)||(56192210-56192332)
chr4 (56-141)||(13205686-13205772)
chr4 (67-146)||(15024709-15024789)
chr4 (87-143)||(16529826-16529882)
chr4 (90-144)||(29845161-29845215)
chr4 (87-143)||(3534080-3534137)
chr4 (13-141)||(38476235-38476364)
chr4 (13-140)||(36755111-36755239)
chr4 (91-143)||(37996901-37996953)
[»] chr3 (5 HSPs)
chr3 (22-141)||(29078886-29079005)
chr3 (87-143)||(18090360-18090416)
chr3 (64-138)||(19332221-19332296)
chr3 (65-139)||(20936180-20936254)
chr3 (64-143)||(19554946-19555026)
[»] scaffold1940 (1 HSPs)
scaffold1940 (87-141)||(547-601)
[»] scaffold0281 (1 HSPs)
scaffold0281 (91-141)||(22286-22336)
[»] chr8 (6 HSPs)
chr8 (86-143)||(8845553-8845610)
chr8 (64-141)||(42845201-42845278)
chr8 (21-139)||(41407196-41407315)
chr8 (93-144)||(25141034-25141085)
chr8 (64-113)||(43417917-43417966)
chr8 (95-143)||(6148485-6148533)
[»] chr5 (4 HSPs)
chr5 (91-141)||(19279427-19279477)
chr5 (91-141)||(9622427-9622477)
chr5 (110-143)||(39628973-39629006)
chr5 (87-144)||(43100987-43101043)
[»] scaffold0001 (1 HSPs)
scaffold0001 (68-141)||(428283-428356)
[»] scaffold0332 (1 HSPs)
scaffold0332 (87-139)||(4621-4673)
[»] scaffold0069 (1 HSPs)
scaffold0069 (85-141)||(61055-61111)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 39923363 - 39923137
Alignment:
Q  22 agagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagta 121  Q
    |||||||||||| ||||| ||||||  |||| | ||||||| ||||||||| ||| |||||| | ||||| |||||||| | |||||||||||||||| |    
T  39923363 agagagaaggtgtttctacaaccaccattctctatagacactcatatattt-acttcataatggggtgcccatttaatgcggtgttaaataggttaagca 39923265  T
Q  122 tccaccattgtggatggtctaatgtcacaaagaataatcttaattatatttgctcttcttttgagaatgattttaataatgttgcattcggatataagtc 221  Q
     ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39923264 cccatcattgtggatggtctaatgtcatgaagaataatcttaattatatttgctcttcttttgagaatgattttaataatgttgcattcggatataagtc 39923165  T
Q  222 taaaatcattagatttggtaggactttt 249  Q
    ||||||||||||||||||||||||||||    
T  39923164 taaaatcattagatttggtaggactttt 39923137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 47024434 - 47024310
Alignment:
Q  13 aaaattaaaagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgag-tgcctatttaatgtgatgttaaat 111  Q
    ||||| || ||||||| |||| ||||||| |||| ||||| | ||| ||  |||||||||||||||| ||| ||| ||||||||||||||| ||| ||||    
T  47024434 aaaatgaacagagagagggtgtttctatagccacctttctctataggcatccatatattttactccacaatggaggtgcctatttaatgtggtgtgaaat 47024335  T
Q  112 aggttaagtatccaccattgtggat 136  Q
    || ||| | | ||||||||||||||    
T  47024334 agattacgcacccaccattgtggat 47024310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 33016452 - 33016375
Alignment:
Q  64 catatattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtc 140  Q
    |||||||||||||||| ||| ||| ||||||||||||||| || |||||| |||||| | | |||||||| |||||||    
T  33016452 catatattttactccaaaatggaggtgcctatttaatgtggtgctaaataagttaagcacctaccattgtagatggtc 33016375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 48379526 - 48379474
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggt 139  Q
    |||||||||||||||| || ||||||||| ||| | |||||||||||||||||    
T  48379526 gtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggt 48379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 8259515 - 8259574
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaatgt 146  Q
    ||||||||||||| ||||| ||||||| | ||| | |||||||||| |||||||||||||    
T  8259515 gtgcctatttaatatgatgctaaatagatgaagcacccaccattgtagatggtctaatgt 8259574  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 20381266 - 20381322
Alignment:
Q  85 gagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||||||||||| || || ||||||||| ||  |||||||||||||| ||||||    
T  20381266 gagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtggttggtct 20381322  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 25389763 - 25389815
Alignment:
Q  91 ctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||| || ||||||||||||| | |||||||||| |||| |||||    
T  25389763 ctatttaatgtggtgctaaataggttaagcacccaccattgttgatgatctaa 25389815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 521247 - 521158
Alignment:
Q  56 tagacacacatatattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaat 144  Q
    ||||||| |||||||||||||||| ||| ||| ||| ||||||||||| || ||||||||||||| || |||||||||||||||||||||    
T  521247 tagacactcatatattttactccacaatggagatgcttatttaatgtggtgctaaataggttaagcatgcaccattgtggatggtctaat 521158  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 20969809 - 20969866
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaat 144  Q
    ||||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||||    
T  20969809 gtgcctacttaatgtggtgctaaataggtgaagtacccaccattgtggatggtctaat 20969866  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 13185524 - 13185445
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||||||| ||| |  ||||||||||||| | || ||| ||||||| |  ||||||||||||||||||||||    
T  13185524 catatattttactccacaataggatgcctatttaatgcggtgctaagtaggttatgcttccaccattgtggatggtctaa 13185445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 15135017 - 15135140
Alignment:
Q  20 aaagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgag--tgcctatttaatgtgatgttaaataggtta 117  Q
    ||||||||| |||||||| ||| ||||  ||||   ||| ||| ||| |||| ||||||| ||| |||  ||||||||||||||| || ||||||||| |    
T  15135017 aaagagagagggtgcttccatagccacccttctccatagccacccatgtattatactccacaatggagggtgcctatttaatgtggtgctaaataggtga 15135116  T
Q  118 agtatccaccattgtggatggtct 141  Q
    |||| || ||||||| ||||||||    
T  15135117 agtaccctccattgttgatggtct 15135140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 32183827 - 32183771
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    ||||||||||||| ||||| ||||||| | ||| | |||||||||||||||||||||    
T  32183827 gtgcctatttaatatgatgctaaatagatgaagcacccaccattgtggatggtctaa 32183771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 27164255 - 27164157
Alignment:
Q  22 agagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcga-gtgcctatttaatgtgatgttaaataggttaag 119  Q
    |||||||||||| ||| ||||||||  |||| | ||| ||| |||||||||||||||||||| || |||||||||||||||  ||||||||||||||||    
T  27164255 agagagaaggtgtttccataaccaccattctctataggcactcatatattttactccataatggatgtgcctatttaatgtagtgttaaataggttaag 27164157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 12287132 - 12287071
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaatgtca 148  Q
    |||||||||||||||| |||||||||||| ||| | ||||||||| ||||||||||| ||||    
T  12287132 gtgcctatttaatgtggtgttaaataggtaaagcacccaccattgaggatggtctaaagtca 12287071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 47066133 - 47066182
Alignment:
Q  92 tatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||||||| |||||||||||||||| |||||||||| || |||||||    
T  47066133 tatttaatgtggtgttaaataggttaagcatccaccattatgaatggtct 47066182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 16706691 - 16706763
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggat 136  Q
    ||||| || ||||||| ||| | |||||||||||||||| || ||||||||| ||| | ||||||||||||||    
T  16706691 catatgttatactccacaatggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 16706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 17680927 - 17680999
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggat 136  Q
    ||||| || ||||||| ||| | |||||||||||||||| || ||||||||| ||| | ||||||||||||||    
T  17680927 catatgttatactccacaatggggtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggat 17680999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 34519417 - 34519523
Alignment:
Q  13 aaaattaaaagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcg-agtgcctatttaatgtgatgttaaat 111  Q
    ||||| || ||||||| |||||||| ||| ||||  ||||   ||| ||| || ||||||||||||||||| | ||||||||||||||||| || |||||    
T  34519417 aaaatgaagagagagagggtgcttccatagccaccattctccataggcacccaaatattttactccataatgggagtgcctatttaatgtggtgctaaat 34519516  T
Q  112 aggttaa 118  Q
    | |||||    
T  34519517 acgttaa 34519523  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 9548539 - 9548460
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||| ||||||||| ||| | ||| |||||||||||| || ||||||||||||| |||||||||||| ||||||||||    
T  9548539 catatagtttactccacaatggggtgtctatttaatgtggtgctaaataggttaagcatccaccattgtagatggtctaa 9548460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 9032729 - 9032803
Alignment:
Q  68 tattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||| ||||||||||| ||| ||||||||||||||| |||||||||||| ||| | |||||||| ||||||||||    
T  9032729 tattatactccataatagaggtgcctatttaatgtggtgttaaataggtgaagcacccaccattttggatggtct 9032803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 25322861 - 25322807
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||||||||||||||| |||||||||||||||  ||||| |||| ||||||||||    
T  25322861 gtgcctatttaatgtggtgttaaataggttaaacatccatcattatggatggtct 25322807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 840330 - 840386
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||||||| || ||| ||||| ||| | ||||||||||| |||||||||    
T  840330 gtgcctatttaatgtggtgctaagtaggtgaagcacccaccattgtgaatggtctaa 840386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 56192332 - 56192210
Alignment:
Q  22 agagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataa-tcgagtgcctatttaatgtgatgttaaataggttaagt 120  Q
    ||||||| |||||||  ||| ||||  |||| | ||||||| |||||||||||||||| ||   | |||||||||||||||| |||||||||||| |||     
T  56192332 agagagagggtgctttcatagccacccttctctatagacacccatatattttactccacaacgggggtgcctatttaatgtggtgttaaataggtaaagc 56192233  T
Q  121 atccaccattgtggatggtctaa 143  Q
    | ||||||||||||||| |||||    
T  56192232 acccaccattgtggatgatctaa 56192210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 141
Target Start/End: Original strand, 13205686 - 13205772
Alignment:
Q  56 tagacacacatatattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||| ||||||||||||| || ||| ||| || |||||||||||| |  ||||||||||||| | |||||||||||||||||||    
T  13205686 tagacacccatatattttacttcacaatggagatgtctatttaatgtggtactaaataggttaagcacccaccattgtggatggtct 13205772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 15024709 - 15024789
Alignment:
Q  67 atattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaatgt 146  Q
    ||||| ||||||||||| ||| |||||||||||| ||||| ||||||||| ||| |||||| ||| |||||||||| ||||    
T  15024709 atattatactccataatggaggtgcctatttaatatgatgctaaataggtgaagcatccactattatggatggtcttatgt 15024789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 16529882 - 16529826
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||||||| || ||||||||| ||| | |||||||||||||||||||||    
T  16529882 gtgcctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggtctaa 16529826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 29845161 - 29845215
Alignment:
Q  90 cctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaat 144  Q
    ||||||||||||| ||||||||||||  || | ||||||||||||||||||||||    
T  29845161 cctatttaatgtggtgttaaataggtggaggacccaccattgtggatggtctaat 29845215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 3534080 - 3534137
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagta-tccaccattgtggatggtctaa 143  Q
    ||||||||||||||||||| ||||||||| ||| |  ||||| |||||||||||||||    
T  3534080 gtgcctatttaatgtgatgctaaataggtgaagcaccccaccgttgtggatggtctaa 3534137  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 38476235 - 38476364
Alignment:
Q  13 aaaattaaaagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgag-tgcctatttaatgtgatgttaaat 111  Q
    ||||| || |||||||| ||||||| |||||||| |||||   ||  ||| |||||||| |||| |||||| | | || |||||||||||| || |||||    
T  38476235 aaaatgaagagagagaacgtgcttccataaccacctttctccataaccacccatatattatacttcataatgggggtgtctatttaatgtggtgctaaat 38476334  T
Q  112 aggttaagtatccaccattgtggatggtct 141  Q
    |||| ||| | |||||||| | ||||||||    
T  38476335 aggtgaagcacccaccattatagatggtct 38476364  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 36755239 - 36755111
Alignment:
Q  13 aaaattaaaagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgag-tgcctatttaatgtgatgttaaat 111  Q
    ||||| || ||||||| |||||||| ||| ||||  ||||   ||| ||| |||||||| ||||||| ||| ||| || ||||||||| || || |||||    
T  36755239 aaaatgaagagagagagggtgcttccatagccacccttctccatagccacccatatattatactccacaatggaggtgtctatttaatatggtgctaaat 36755140  T
Q  112 aggttaagtatccaccattgtggatggtc 140  Q
    || | ||| | ||||||||||||||||||    
T  36755139 agatgaagcacccaccattgtggatggtc 36755111  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 37996953 - 37996901
Alignment:
Q  91 ctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||| || |||||||   ||| |||||||||||||||||||||||    
T  37996953 ctatttaatgtggtgctaaatagaagaagcatccaccattgtggatggtctaa 37996901  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 29078886 - 29079005
Alignment:
Q  22 agagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagta 121  Q
    ||||||| |||||||| ||| ||||  ||||   ||||||| ||| ||| |||||||| ||| | || ||||||||||||| |||||||||||||||| |    
T  29078886 agagagagggtgcttccatagccacccttctccatagacacccatgtatattactccacaatggggtacctatttaatgtggtgttaaataggttaagca 29078985  T
Q  122 tccaccattgtggatggtct 141  Q
      || |||||||||||||||    
T  29078986 ctcatcattgtggatggtct 29079005  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 18090416 - 18090360
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||||||||| || ||||||| | ||| |||||||||||||||||||||||    
T  18090416 gtgcctatttaatgtggtgctaaatagatgaagcatccaccattgtggatggtctaa 18090360  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 19332221 - 19332296
Alignment:
Q  64 catatattttactccataatcgag-tgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatgg 138  Q
    |||||| ||||||||| ||| ||| || |||||||| ||| || ||||||||||||| |||| |||||||||||||    
T  19332221 catatactttactccacaatagaggtgtctatttaacgtggtgctaaataggttaagcatccgccattgtggatgg 19332296  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 20936180 - 20936254
Alignment:
Q  65 atatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggt 139  Q
    |||||| |||||||| ||| | || ||||||||| ||| | |||||||| ||||| ||||| |||||||||||||    
T  20936180 atatatattactccacaatggggtacctatttaaagtggtattaaatagattaagcatccatcattgtggatggt 20936254  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 19554946 - 19555026
Alignment:
Q  64 catatattttactccataatcg-agtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||| ||||||| ||| | | |||||||||||| |  || ||||||||  ||| |||||||||||||||||||||||    
T  19554946 catatattatactccacaataggaatgcctatttaatatagtggtaaataggagaagcatccaccattgtggatggtctaa 19555026  T

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Target: scaffold1940 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 601 - 547
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||||||||||    
T  601 gtgcctatttaatgtggtgttaaataggtgaagcattcaccattgtggatggtct 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 22286 - 22336
Alignment:
Q  91 ctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  22286 ctatttaatgtggtgttaaataggtgaagcatccaccattgtggatggtct 22336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 8845610 - 8845553
Alignment:
Q  86 agtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    ||||||||||||||||| || ||||||||| ||| | |||||||||||||||||||||    
T  8845610 agtgcctatttaatgtggtgctaaataggtaaagcacccaccattgtggatggtctaa 8845553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 42845278 - 42845201
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||| |||||||||||| |||| ||||||||||||| || ||||||| ||||||   || |||||||||||||||    
T  42845278 catatatattactccataatggagtacctatttaatgtggtgctaaatagattaagtgcacatcattgtggatggtct 42845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 41407315 - 41407196
Alignment:
Q  21 aagagagaaggtgcttctataaccacatttctgtgtagacacacatatattttactccataatcga--gtgcctatttaatgtgatgttaaataggttaa 118  Q
    |||||||| |||||||| ||| ||||  |||| | ||| ||| |||||||||||||||| ||| ||  ||||||||||||| || |||||||||| | ||    
T  41407315 aagagagagggtgcttccatagccaccattctctatagccacccatatattttactccacaat-gatggtgcctatttaatatggtgttaaatagatgaa 41407217  T
Q  119 gtatccaccattgtggatggt 139  Q
    | | ||| |||||||||||||    
T  41407216 gcacccatcattgtggatggt 41407196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 25141034 - 25141085
Alignment:
Q  93 atttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaat 144  Q
    ||||||| || |||||||||| | ||| ||||||||||||||||||||||||    
T  25141034 atttaatatggtgttaaatagatgaagcatccaccattgtggatggtctaat 25141085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 43417917 - 43417966
Alignment:
Q  64 catatattttactccataatcgagtgcctatttaatgtgatgttaaatag 113  Q
    |||||||| ||||| ||||| |||||||||||||||||| || |||||||    
T  43417917 catatattatactctataatggagtgcctatttaatgtggtgctaaatag 43417966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 6148485 - 6148533
Alignment:
Q  95 ttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaa 143  Q
    ||||| || |||||||||||| ||| | |||||||||||||||||||||    
T  6148485 ttaatatggtgttaaataggtgaagcacccaccattgtggatggtctaa 6148533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 19279477 - 19279427
Alignment:
Q  91 ctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||||||||||| ||||||||| ||| | |||||||||||||||||||    
T  19279477 ctatttaatgtgatgctaaataggtgaagcacccaccattgtggatggtct 19279427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 9622427 - 9622477
Alignment:
Q  91 ctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||||||||||| || ||||||||| ||| | |||||||||||||||||||    
T  9622427 ctatttaatgtggtgctaaataggtgaagcacccaccattgtggatggtct 9622477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 39628973 - 39629006
Alignment:
Q  110 ataggttaagtatccaccattgtggatggtctaa 143  Q
    |||||||||| |||||||||||||||||||||||    
T  39628973 ataggttaagcatccaccattgtggatggtctaa 39629006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 43100987 - 43101043
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtctaat 144  Q
    |||| ||||||||||| || ||||||||||||| | |||||||| |||||||||||||    
T  43100987 gtgcttatttaatgtggtgctaaataggttaagcacccaccatt-tggatggtctaat 43101043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 428356 - 428283
Alignment:
Q  68 tattttactccataatcgagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    |||| ||||||| ||| | ||||||||||||| || || ||||||||| ||| | |||||||||||||||||||    
T  428356 tattatactccacaatggggtgcctatttaatctggtgctaaataggtgaagcacccaccattgtggatggtct 428283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 4621 - 4673
Alignment:
Q  87 gtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggt 139  Q
    |||| |||||||||||||||||||||||| || || |||||||| ||||||||    
T  4621 gtgcttatttaatgtgatgttaaataggtgaaatacccaccattctggatggt 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 61055 - 61111
Alignment:
Q  85 gagtgcctatttaatgtgatgttaaataggttaagtatccaccattgtggatggtct 141  Q
    ||||||||||||||| || || ||||||||| ||  |||||||||||||| ||||||    
T  61055 gagtgcctatttaatatggtgctaaataggtgaaacatccaccattgtggttggtct 61111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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