View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19243_high_6 (Length: 249)
Name: NF19243_high_6
Description: NF19243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19243_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 39922919 - 39923153
Alignment:
| Q |
16 |
taaggcactgagacgtaggggaattatgattaataaagagcctccaactttgtttagcta--acattggcttctttgagacaagatggtatgccttcctc |
113 |
Q |
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| T |
39922919 |
taaggcactgagacgtaggggaattatgattaataaagagcctccaactttgtttagctataacattggcttctttgaggcaagatggtatgccttcctc |
39923018 |
T |
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| Q |
114 |
tttttactagaagtattaggacatcattgataatgatgtcatctccatggctctcgatgttcttataaacaatgaagttgctttaataaaactatatgtg |
213 |
Q |
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| T |
39923019 |
tttttactagaagtattaggacatcattgataatgatgtcatctccatg-ctctcgatgttcttataaacaatgaagttgctttaataaaactatatgtg |
39923117 |
T |
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| Q |
214 |
tcttatacctaaaattaataaaagtcctaccaaatc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39923118 |
tcttatacctaaaattaataaaagtcctaccaaatc |
39923153 |
T |
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