View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19243_low_3 (Length: 536)
Name: NF19243_low_3
Description: NF19243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19243_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Complemental strand, 20939530 - 20939024
Alignment:
| Q |
11 |
aagaatataaagatttcatacaacattagaacgagcatggtaaccatttctagttgttttggcttggtgaatattcaatcctttttctcgagggcttgat |
110 |
Q |
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| T |
20939530 |
aagaaaataaagatttcatacaacattagaacgagcattgtaaccatttctagttgttttggcttggtgaatcttcaatcctttttctcgagggtttgat |
20939431 |
T |
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| Q |
111 |
gaatcttcaatcaattttatcgggttttgaataaataaagagtgaaattgaattccccagctttaggagttacnnnnnnncttcccggtgtctttatctt |
210 |
Q |
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| T |
20939430 |
gaatcttcaatcaattttatcgggttttgaataaataaagagtgaaattgaattccccagctttaggagttacaaaaaa-cttcccggtgtctttatctt |
20939332 |
T |
|
| Q |
211 |
ttgcatttcttcatatttattcgggcatacaaatgtctttttaacaacaatcaagtttgattgagattgtgaatatcatttacattttgagtatgtcgcc |
310 |
Q |
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| T |
20939331 |
ttgcatttcttcatatttatccgggcatacaaatgtctttttaacaacaaccaagtttgattgagattgtgaatatcatttacattttgagtatgtcgcc |
20939232 |
T |
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| Q |
311 |
caatttcctgatttgtcatatgaataagttatgattcactaaattattgacaatacatttataattaaaatatcatagtctaacttttttatacaacttt |
410 |
Q |
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| T |
20939231 |
caatttcctgatttgtcatatgaataagttatgattcactaaattattgacaatacatttataattaaaatatcatagtctaacttttttatacaacttt |
20939132 |
T |
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| Q |
411 |
tatatccatgctaataaatatcaaatatagaaattatatgatttcagcaaaaaggagaaagttgtgcaaggaaaaatatatgattaagcagctatgagat |
510 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20939131 |
tatatccatgctaatacatatcaaatatagaaattatatgatttcagcaaaaaggagaaagttgtgcaaggaaaaatatatgattaagcagctatgagat |
20939032 |
T |
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| Q |
511 |
gtagcatt |
518 |
Q |
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| T |
20939031 |
gtagcatt |
20939024 |
T |
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