View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19243_low_5 (Length: 449)

Name: NF19243_low_5

Description: NF19243

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19243_low_5

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 185; E-Value: 1e-100

Query Start/End: Original strand, 214 - 434

Target Start/End: Original strand, 34420737 - 34420964

Alignment:

Q	214	ttgtgatatcaacata--aaaacataaaaagcctgcaaccattaagtagatgaaatggaccaaaacattagacagaca-----cgacacatacatagtct	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	34420737	ttgtgatatcaacatataaaaacataaaaagcctgcaaccattaaatagatgaaatagaccaaaacattagacagacacgacacgacacatacatactct	34420836	T

Q	307	ttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataaacactgcaatattgcataatt	406	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34420837	ttttactcgtaaacaaaatgttgagccacttttaaacttgattttgtttggaatttgatcaagagatttactggcataaacactgcaatattgcataatt	34420936	T

Q	407	attttgaacaatatttattatagaaact	434	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34420937	attttgaacaatatttattatagaaact	34420964	T

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Target: chr5; HSP #2

Raw Score: 76; E-Value: 6e-35

Query Start/End: Original strand, 41 - 132

Target Start/End: Original strand, 34420407 - 34420497

Alignment:

Q	41	ttactaaactagtcacacatatacaatgatatttatacttgcaaaacaagtaaaacagttacttgttacacaagtcaaatagtttcaactaa	132	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	34420407	ttactaaactagtcacacatatacaatgatatttatacttgcaaaacaagt-aaacagttacttgttacacaagtcaactagttccaactaa	34420497	T

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