View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19244_high_10 (Length: 235)

Name: NF19244_high_10
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19244_high_10
NF19244_high_10
[»] chr8 (3 HSPs)
chr8 (153-235)||(15243599-15243681)
chr8 (137-232)||(12563401-12563496)
chr8 (137-235)||(12608056-12608156)
[»] chr7 (9 HSPs)
chr7 (137-233)||(27046062-27046158)
chr7 (152-235)||(13278644-13278727)
chr7 (137-235)||(5949478-5949576)
chr7 (151-235)||(5464483-5464567)
chr7 (152-231)||(10328892-10328971)
chr7 (151-233)||(25828321-25828403)
chr7 (151-235)||(12501787-12501871)
chr7 (163-235)||(41029437-41029509)
chr7 (134-235)||(12527421-12527522)
[»] chr2 (7 HSPs)
chr2 (137-235)||(4653801-4653899)
chr2 (157-235)||(8271051-8271129)
chr2 (152-233)||(22540179-22540260)
chr2 (137-233)||(6570942-6571034)
chr2 (151-232)||(44440545-44440626)
chr2 (137-220)||(38437942-38438025)
chr2 (137-198)||(45036000-45036061)
[»] scaffold0013 (1 HSPs)
scaffold0013 (151-235)||(54684-54768)
[»] chr4 (6 HSPs)
chr4 (137-202)||(23397490-23397554)
chr4 (151-235)||(27184690-27184774)
chr4 (137-228)||(25969863-25969954)
chr4 (153-235)||(47924197-47924279)
chr4 (151-235)||(41940472-41940556)
chr4 (151-188)||(11371754-11371791)
[»] chr6 (4 HSPs)
chr6 (151-235)||(2443436-2443520)
chr6 (137-195)||(3036764-3036822)
chr6 (137-189)||(17915111-17915163)
chr6 (17-47)||(7967564-7967594)
[»] chr5 (2 HSPs)
chr5 (152-234)||(38697392-38697474)
chr5 (137-200)||(18147023-18147086)
[»] chr3 (3 HSPs)
chr3 (137-231)||(50426095-50426189)
chr3 (151-230)||(17508839-17508918)
chr3 (137-235)||(53589928-53590026)
[»] chr1 (5 HSPs)
chr1 (137-235)||(16824013-16824111)
chr1 (153-232)||(18565977-18566056)
chr1 (137-235)||(39997410-39997508)
chr1 (137-235)||(8266872-8266970)
chr1 (151-235)||(11075966-11076050)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 15243681 - 15243599
Alignment:
Q  153 tatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||||||| | |||| ||||||||||||||||||||||    
T  15243681 tatctcttaggatgagagattccatgccaagcggagggcagttccagtgagcagagcaccttgcatgtgatccttccttagcc 15243599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 12563496 - 12563401
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcctta 232  Q
    ||||||| ||| | |||||||| || ||||| ||||| ||| ||||||||||| || ||| |||||||| | |||| |||||||||||||||||||    
T  12563496 aattaagttccaagcttatctcccatgatgacagatttcataccaggcggagggcagttcgagtgagcatagcaccttgcatgtgatccttcctta 12563401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 12608156 - 12608056
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcacc--atgcatgtgatccttccttagc 234  Q
    ||||||| ||| | ||||||||||||||||||||||||| || ||| |||||| || ||||| |||||| | ||||   | |||||||||||||||||||    
T  12608156 aattaagttccaagcttatctctcaggatgagagattccgtgtcagacggagggcagttccaatgagcagagcaccttttacatgtgatccttccttagc 12608057  T
Q  235 c 235  Q
    |    
T  12608056 c 12608056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 27046062 - 27046158
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttag 233  Q
    ||||||||||| | ||||||||  ||||||||||||| |||| |||||||| |||| |||||||||||| | |||| ||||||||||||||||||||    
T  27046062 aattaagctccaagcttatctcctaggatgagagatttcatgtcaggcggatgacagttccagtgagcagagcaccttgcatgtgatccttccttag 27046158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 13278727 - 13278644
Alignment:
Q  152 ttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||||||||||||||||||||||| |||||||||| |  |||||||||||| | |||| ||||||| ||||||||||||||    
T  13278727 ttatctctcaggatgagagattccatgacaggcggagggcggttccagtgagcagagcaccttgcatgtcatccttccttagcc 13278644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 5949478 - 5949576
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| | |  ||| |||||||||||||| |||||||    
T  5949478 aattaagttccaagcttatctctcagaatgagagattccatgccgggcggagggcaattccagtgagtagagtaccttgcatgtgatcctttcttagcc 5949576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 5464483 - 5464567
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    |||||||||||||||||||||||| ||| ||| |||||| || || |||||| |||| |||| ||||||||||||||||||||||    
T  5464483 cttatctctcaggatgagagattctatgtcagacggagggcagtttcagtgaccaaagcaccttgcatgtgatccttccttagcc 5464567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 10328892 - 10328971
Alignment:
Q  152 ttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcctt 231  Q
    ||||||||||||||||||||||||||| |||||||||||   |||||||||||| | |||  ||||||||||||||||||    
T  10328892 ttatctctcaggatgagagattccatgtcaggcggaggatggttccagtgagcagagcactttgcatgtgatccttcctt 10328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 25828321 - 25828403
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttag 233  Q
    ||||||||||||||||||||||||||||| |||| || |||| |||| ||||| |    ||| ||||||||||||||||||||    
T  25828321 cttatctctcaggatgagagattccatgctaggcagaagacagttccggtgagtagggaaccttgcatgtgatccttccttag 25828403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 12501871 - 12501787
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||||||| ||||| ||||||||||||||| || || || |||||||||||| | |||| ||||||  |||| |||||||||    
T  12501871 cttatctctcaagatgaaagattccatgccaggaggggggcagttccagtgagcagagcaccttgcatgcaatccgtccttagcc 12501787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 41029509 - 41029437
Alignment:
Q  163 gatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    |||||||||||||||| |||| |||||||| ||||| |||||| | |||| || |||||| ||||||||||||    
T  41029509 gatgagagattccatgtcaggtggaggacagttccaatgagcagagcaccttgtatgtgacccttccttagcc 41029437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 12527522 - 12527421
Alignment:
Q  134 cggaattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttag 233  Q
    |||||||||| ||  | ||||||||||||||||| ||||||||||| |||||| || || |||| ||| ||| | |||| ||||||  |||| |||||||    
T  12527522 cggaattaagttcgaagcttatctctcaggatgaaagattccatgctaggcggggggcagttcctgtgggcagagcaccttgcatgcaatccgtccttag 12527423  T
Q  234 cc 235  Q
    ||    
T  12527422 cc 12527421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 4653899 - 4653801
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| |||||||||||||  |||||||||| |||| ||| ||||||||| |||||||||||| | |||| || |||||||||||||||||||    
T  4653899 aattaagttccaaacttatctctcaaaatgagagatttcatgtcagacggaggacacttccagtgagcagagcaccttgtatgtgatccttccttagcc 4653801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 8271051 - 8271129
Alignment:
Q  157 tctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||| ||||||| |||||||  |||||||||| ||||||||||||||| | || | |||||||||| |||||||||||    
T  8271051 tctcaagatgagacattccatatcaggcggagggcaattccagtgagcatagcatcttgcatgtgattcttccttagcc 8271129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 22540260 - 22540179
Alignment:
Q  152 ttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttag 233  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||| || || | |||| || ||||||  |||||||||    
T  22540260 ttatctctcaggatgagagattccatatcaggcggagggcaattccagcgaacagagcaccttgtatgtgactcttccttag 22540179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 6570942 - 6571034
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttag 233  Q
    ||||||| ||| | |||||||||||||||||||||||||||||    |||||| || ||||||||||||   | || |||||| |||||||||||||    
T  6570942 aattaagttccaagcttatctctcaggatgagagattccatgc----cggagggcagttccagtgagcagcacgccttgcatgcgatccttccttag 6571034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 44440626 - 44440545
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcctta 232  Q
    ||||||||||||||| ||||||| ||| |||| ||||||| | |||||| || || | || | |||||||||||||||||||    
T  44440626 cttatctctcaggattagagatttcataccagacggaggatagttccagcgaacagagcaacttgcatgtgatccttcctta 44440545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 38438025 - 38437942
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgt 220  Q
    ||||||| ||| |||||||||||||| || ||||||||||||| |||| ||||  | |||||| ||||| | |||| |||||||    
T  38438025 aattaagttccaaacttatctctcagaataagagattccatgctaggcagagggtagttccagcgagcagagcaccttgcatgt 38437942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 45036000 - 45036061
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattcca 198  Q
    ||||||| ||| ||||||||||||||||||| |||||| |||| || |||||| || |||||    
T  45036000 aattaagttccaaacttatctctcaggatgaaagattcaatgctagacggaggtcagttcca 45036061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 54684 - 54768
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||||| |  ||||||||||||||| |||| |||||||| |||||||||||| | |||| |||||||||| |||||||||||    
T  54684 cttatctcttataatgagagattccatgtcaggtggaggacagttccagtgagcagagcaccttgcatgtgattcttccttagcc 54768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 23397490 - 23397554
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtga 202  Q
    ||||||| ||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||||    
T  23397490 aattaagttccaaacttatcttt-aggatgagagattccatgccagacggaggacaattccagtga 23397554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 27184690 - 27184774
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    |||||||||||| | |||||||| |||  ||| |||||||||||||||||||||| | |||  |||| |||||||||||||||||    
T  27184690 cttatctctcagaaagagagatttcatatcagacggaggacaattccagtgagcagagcacattgcacgtgatccttccttagcc 27184774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 25969954 - 25969863
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttc 228  Q
    ||||||| ||| | |||||||||| |||||||||||||||||||| ||| ||| || ||| |||||||| | |||| |||||||||| ||||    
T  25969954 aattaagttccaagcttatctctcgggatgagagattccatgccaagcgaagggcagttctagtgagcagaacaccttgcatgtgattcttc 25969863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 47924197 - 47924279
Alignment:
Q  153 tatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| || ||||||||||||||||| || ||||| ||||| ||||||||| | |||| ||||| |||||||| |||||||    
T  47924197 tatctcttagaatgagagattccatgcccggtggagggcaatttcagtgagcagagcaccttgcatatgatccttacttagcc 47924279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 41940472 - 41940556
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||||| || || ||||||| |||| ||||||||||| | ||| || ||||| | |||| ||||||||||||||||||||||    
T  41940472 cttatctctgagaataagagatttcatgtcaggcggaggatagttctagcgagcagaacaccttgcatgtgatccttccttagcc 41940556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 11371791 - 11371754
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggag 188  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  11371791 cttatctctcaggataagagattccatgcctggcggag 11371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 2443520 - 2443436
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    |||||||||||| | |||||||| |||  ||| |||||||||||||||||||||| | |||  |||| |||||||||||||||||    
T  2443520 cttatctctcagaaagagagatttcatatcagacggaggacaattccagtgagcagagcacattgcacgtgatccttccttagcc 2443436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 3036764 - 3036822
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaatt 195  Q
    ||||||| ||| | ||||||||||||||||||||||||||| ||| |||||||||||||    
T  3036764 aattaagttccaagcttatctctcaggatgagagattccataccacgcggaggacaatt 3036822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 17915163 - 17915111
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggagg 189  Q
    ||||||| ||| | ||||||||||| |||||||||||||||||||||||||||    
T  17915163 aattaagttccaagcttatctctcaagatgagagattccatgccaggcggagg 17915111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 7967594 - 7967564
Alignment:
Q  17 aagtgctttttataagctctttcaaacactt 47  Q
    |||||||||||||||||||||||||||||||    
T  7967594 aagtgctttttataagctctttcaaacactt 7967564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 38697392 - 38697474
Alignment:
Q  152 ttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagc 234  Q
    ||||||||||||||||||||||||||||||| | |||| || |||||   |||| | || | |||||||||||||||||||||    
T  38697392 ttatctctcaggatgagagattccatgccagacagagggcagttccaaccagcagagcatcttgcatgtgatccttccttagc 38697474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 18147023 - 18147086
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagt 200  Q
    ||||||| ||| | ||||| ||| |||||||||||||||| |||| |||||||||| |||||||    
T  18147023 aattaagttccaagcttatatcttaggatgagagattccacgccaagcggaggacagttccagt 18147086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 50426189 - 50426095
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcctt 231  Q
    ||||||| ||| ||||||| ||||| | |||||||||| ||| ||| |||| | || |||||||||||||| |||  ||||||||||||||||||    
T  50426189 aattaagttccaaacttatttctcaaggtgagagattcaatgtcagacggatggcagttccagtgagcaaagcacattgcatgtgatccttcctt 50426095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 17508918 - 17508839
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcct 230  Q
    ||||||| |||| |||||||| ||||||| ||  |||||||| ||||||| |||| | |||| |||||||||||||||||    
T  17508918 cttatctatcagaatgagagagtccatgctagatggaggacagttccagtaagcagagcaccttgcatgtgatccttcct 17508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 53589928 - 53590026
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| | ||||||||||| | ||||||||||||||| || ||| |||||||| ||||||| | | |||  |||||||||||  |||||||||    
T  53589928 aattaagttccaagcttatctctcatggtgagagattccatgcaagacggcggacaatttcagtgagaagagcacattgcatgtgatctctccttagcc 53590026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 16824013 - 16824111
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| | ||||||||| |||| ||||||||||||||| | | |||| || ||||| |||||| | |||| |||||||||||||| |||||||    
T  16824013 aattaagttccaagcttatctcttaggaagagagattccatgcccgtcagagggcagttccattgagcagagcaccttgcatgtgatcctttcttagcc 16824111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 18566056 - 18565977
Alignment:
Q  153 tatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttcctta 232  Q
    |||||||||| || ||||||||||||||| ||||||| ||||||||| ||||| | |||  ||||| ||||| |||||||    
T  18566056 tatctctcagaataagagattccatgccaagcggagggcaattccagcgagcagagcactttgcatatgatcattcctta 18565977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 39997410 - 39997508
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| | || |||||||  |||||||||||||||| |||||||||  || |||||||||||  | |||| || |||||||| ||||||||||    
T  39997410 aattaagttccaagctgatctctcgtgatgagagattccatgtcaggcggagagcagttccagtgagccgagcaccttggatgtgatcattccttagcc 39997508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 8266970 - 8266872
Alignment:
Q  137 aattaagctcccaacttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    ||||||| ||| | |||||||||||  |||||||||| || ||| |||||||| || |||||| ||| | | |||| ||||||||||| ||| ||||||    
T  8266970 aattaagttccaagcttatctctcaaaatgagagatttcaagcctggcggagggcagttccagcgagtagagcaccttgcatgtgatctttctttagcc 8266872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 11076050 - 11075966
Alignment:
Q  151 cttatctctcaggatgagagattccatgccaggcggaggacaattccagtgagcaaatcaccatgcatgtgatccttccttagcc 235  Q
    |||||||||||| |||||||||| |||  ||| |||||| || ||||| |||||| |  ||  |||||||||| |||||||||||    
T  11076050 cttatctctcagaatgagagatttcatttcagacggagggcagttccaatgagcagagtactttgcatgtgattcttccttagcc 11075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University