View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_high_2 (Length: 477)
Name: NF19244_high_2
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 5965343 - 5965699
Alignment:
| Q |
14 |
aatatctagtatgtctcttattccaaatggttaatttagtagtacttatattatatatgccccagcaatctgctatcctgactaaaccttcccaggttct |
113 |
Q |
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| T |
5965343 |
aatatctagtatgtctcttattccaaatggttaatttagtagtacttatattatatatgccccagcaatctgctatcctgactaaaccttcccaggttct |
5965442 |
T |
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| Q |
114 |
ggccaatacacattgcaaatgctccaccacaattattag-tacctgtgtatctgcccttcaagcatggacaaacaataccatcacatgtaacaatccttg |
212 |
Q |
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| T |
5965443 |
ggccaatacacattgcaaatgttccaccacaattattaggtacctgtgtatctgcccttcaagcatggacaaacaataccatcacatgtaacaatccttg |
5965542 |
T |
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| Q |
213 |
attggcaccaaatatccctaactagttatgctatttttattctttgcccatatcatgaattattactcatgggaccataaaagtgtatatttaagttatc |
312 |
Q |
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| T |
5965543 |
attggcagcaaatatccttaactagttatgctatttttattctttgcccatatcatgaattattactcatgggaccataaaagtgtatatttaagttatc |
5965642 |
T |
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| Q |
313 |
tgattcaaccaatcaaatatattaatactatgacctatttttaattcataatactgactaactt |
376 |
Q |
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| T |
5965643 |
tgattcaaccaatcaa-------aatactataacctatttttaattcataatactgactaactt |
5965699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 359 - 458
Target Start/End: Original strand, 5965715 - 5965809
Alignment:
| Q |
359 |
cataatactgactaacttacgttagatcttcattcactttcgatgcccaaattaaatattatcatcttttaattttctcattttactaacaagtcgtttt |
458 |
Q |
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| T |
5965715 |
cataatactgactaacttacgttagatcttcattcactttcgatgccc-----aaatattatcatcttttaattttctcattttactaacaagtcgtttt |
5965809 |
T |
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