View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_high_5 (Length: 336)
Name: NF19244_high_5
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 23706672 - 23706361
Alignment:
| Q |
9 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23706672 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
23706573 |
T |
|
| Q |
109 |
ctcaattggaaggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
208 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23706572 |
ctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
23706473 |
T |
|
| Q |
209 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23706472 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
23706373 |
T |
|
| Q |
309 |
tgttgtagctgt |
320 |
Q |
| |
|
|||||||||||| |
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|
| T |
23706372 |
tgttgtagctgt |
23706361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 23725128 - 23724817
Alignment:
| Q |
9 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23725128 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
23725029 |
T |
|
| Q |
109 |
ctcaattggaaggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23725028 |
ctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
23724929 |
T |
|
| Q |
209 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23724928 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
23724829 |
T |
|
| Q |
309 |
tgttgtagctgt |
320 |
Q |
| |
|
|||||||||||| |
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|
| T |
23724828 |
tgttgtagctgt |
23724817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 23743584 - 23743273
Alignment:
| Q |
9 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23743584 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
23743485 |
T |
|
| Q |
109 |
ctcaattggaaggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23743484 |
ctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
23743385 |
T |
|
| Q |
209 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23743384 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
23743285 |
T |
|
| Q |
309 |
tgttgtagctgt |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23743284 |
tgttgtagctgt |
23743273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 23773129 - 23772818
Alignment:
| Q |
9 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23773129 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
23773030 |
T |
|
| Q |
109 |
ctcaattggaaggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23773029 |
ctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
23772930 |
T |
|
| Q |
209 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23772929 |
tatggatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaat |
23772830 |
T |
|
| Q |
309 |
tgttgtagctgt |
320 |
Q |
| |
|
|||||||||||| |
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|
| T |
23772829 |
tgttgtagctgt |
23772818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 4135413 - 4135129
Alignment:
| Q |
9 |
attattcttttgtgtatatccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgat |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4135413 |
attattcttttctgtatatccattccatcttagttaattcttct-------cgtaactcatgaaaacatgtcttgtttatttcaaatatataaaactgat |
4135321 |
T |
|
| Q |
109 |
ctcaattggaaggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatc |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4135320 |
ctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggt----------------gcatgatc |
4135237 |
T |
|
| Q |
209 |
tatgg--atatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcaga |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | || |
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|
| T |
4135236 |
tatggatatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaatcgattctcgatgataaacaaattccga |
4135137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 22420029 - 22419934
Alignment:
| Q |
225 |
caattttatggttttgataaaatggaaatcctttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgt |
320 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| |||||||||||||||||| | ||||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
22420029 |
caattttatggttttggtaaaatgaaaatcctttaaatttaattgaattggtagtcaattctccgtgataaacaaatccagaatcgttgtggctgt |
22419934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 22420296 - 22420206
Alignment:
| Q |
28 |
ccattccatcttagttaattcctctaataaatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattgga |
118 |
Q |
| |
|
|||||||||||||| ||||||||| || |||| || |||||||||||| |||||||||| |||||| ||||||| |||||||||||||| |
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|
| T |
22420296 |
ccattccatcttagctaattcctcatatggatcgcaattcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattgga |
22420206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 22420174 - 22420102
Alignment:
| Q |
120 |
ggtttgtttctcccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcattatc |
192 |
Q |
| |
|
||||| ||||| || ||||| |||||||| | |||||||||||||| | ||||| || |||||||||||||| |
|
|
| T |
22420174 |
ggtttatttctaccagtggaattttaggtgtgagaattgactttctgaaatgttgtccatttggtgcattatc |
22420102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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