View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19244_low_10 (Length: 254)

Name: NF19244_low_10
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19244_low_10
NF19244_low_10
[»] chr1 (10 HSPs)
chr1 (16-254)||(29099840-29100070)
chr1 (156-247)||(19258742-19258833)
chr1 (154-250)||(2509051-2509147)
chr1 (154-247)||(34307206-34307299)
chr1 (156-238)||(28647392-28647474)
chr1 (154-250)||(46901803-46901899)
chr1 (154-247)||(39249931-39250024)
chr1 (194-247)||(10146996-10147049)
chr1 (156-220)||(8848923-8848987)
chr1 (154-229)||(9642933-9643009)
[»] chr7 (22 HSPs)
chr7 (154-247)||(23980161-23980254)
chr7 (154-229)||(5811231-5811306)
chr7 (154-247)||(13108178-13108270)
chr7 (154-247)||(42221031-42221124)
chr7 (154-239)||(20086696-20086781)
chr7 (154-247)||(28307563-28307656)
chr7 (154-247)||(31148320-31148413)
chr7 (154-254)||(7699951-7700051)
chr7 (154-254)||(7700149-7700249)
chr7 (154-254)||(7700347-7700447)
chr7 (154-254)||(7700545-7700645)
chr7 (154-226)||(46475075-46475147)
chr7 (154-247)||(26972271-26972364)
chr7 (154-254)||(21807390-21807490)
chr7 (151-247)||(30887730-30887826)
chr7 (154-250)||(34108453-34108549)
chr7 (154-238)||(45782728-45782812)
chr7 (154-229)||(34828113-34828188)
chr7 (154-247)||(36346633-36346725)
chr7 (154-227)||(15020330-15020402)
chr7 (154-229)||(38321057-38321132)
chr7 (186-229)||(42950113-42950156)
[»] chr6 (6 HSPs)
chr6 (154-247)||(14022964-14023057)
chr6 (154-246)||(24208475-24208567)
chr6 (154-247)||(3986973-3987066)
chr6 (154-247)||(3118115-3118208)
chr6 (154-254)||(13697592-13697691)
chr6 (154-224)||(15345727-15345797)
[»] chr4 (12 HSPs)
chr4 (158-247)||(46192389-46192478)
chr4 (158-250)||(45829329-45829421)
chr4 (154-238)||(44275745-44275829)
chr4 (154-247)||(3672304-3672397)
chr4 (154-247)||(28093164-28093257)
chr4 (154-247)||(49243845-49243938)
chr4 (154-254)||(6112653-6112753)
chr4 (154-229)||(51038811-51038887)
chr4 (154-228)||(7217814-7217888)
chr4 (154-254)||(21391023-21391123)
chr4 (154-229)||(35544960-35545035)
chr4 (156-229)||(54849836-54849909)
[»] chr5 (15 HSPs)
chr5 (154-242)||(17225352-17225440)
chr5 (154-250)||(9408107-9408203)
chr5 (154-247)||(40888010-40888103)
chr5 (154-250)||(1815684-1815780)
chr5 (154-250)||(2237303-2237399)
chr5 (154-254)||(39370950-39371050)
chr5 (156-247)||(14831574-14831665)
chr5 (154-247)||(41003918-41004010)
chr5 (156-239)||(4300613-4300696)
chr5 (154-247)||(13347158-13347251)
chr5 (154-239)||(31800596-31800681)
chr5 (181-247)||(33404531-33404597)
chr5 (154-238)||(27553441-27553525)
chr5 (188-225)||(19596169-19596206)
chr5 (189-231)||(12164297-12164339)
[»] chr2 (11 HSPs)
chr2 (158-247)||(36315591-36315680)
chr2 (158-247)||(37914308-37914397)
chr2 (154-247)||(44958143-44958236)
chr2 (154-247)||(33732599-33732692)
chr2 (154-229)||(24137160-24137235)
chr2 (154-239)||(37498931-37499018)
chr2 (154-227)||(3830965-3831038)
chr2 (154-247)||(6376306-6376394)
chr2 (154-247)||(16089852-16089944)
chr2 (154-222)||(41188824-41188892)
chr2 (154-229)||(14573043-14573118)
[»] scaffold0062 (1 HSPs)
scaffold0062 (151-247)||(6748-6844)
[»] chr8 (13 HSPs)
chr8 (154-254)||(30432362-30432462)
chr8 (154-247)||(12665374-12665468)
chr8 (154-229)||(31318853-31318928)
chr8 (154-247)||(33726041-33726135)
chr8 (154-247)||(42162628-42162721)
chr8 (154-247)||(44081810-44081903)
chr8 (156-247)||(36189246-36189337)
chr8 (154-250)||(18184580-18184676)
chr8 (154-229)||(38845091-38845165)
chr8 (154-227)||(43186077-43186150)
chr8 (154-250)||(10203691-10203787)
chr8 (186-247)||(31547-31608)
chr8 (154-247)||(42668850-42668942)
[»] chr3 (16 HSPs)
chr3 (154-254)||(39467169-39467269)
chr3 (154-254)||(36749429-36749529)
chr3 (154-250)||(46112012-46112108)
chr3 (163-254)||(39072350-39072441)
chr3 (154-247)||(34749966-34750059)
chr3 (154-247)||(36370406-36370499)
chr3 (154-247)||(44000019-44000112)
chr3 (154-247)||(21559591-21559684)
chr3 (154-247)||(22894710-22894803)
chr3 (154-227)||(51339851-51339924)
chr3 (154-254)||(30735564-30735663)
chr3 (181-247)||(29460690-29460756)
chr3 (181-247)||(29471542-29471608)
chr3 (189-247)||(38231323-38231381)
chr3 (154-247)||(20856221-20856312)
chr3 (157-247)||(53638165-53638255)
[»] scaffold0043 (1 HSPs)
scaffold0043 (181-229)||(87259-87307)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 29100070 - 29099840
Alignment:
Q  16 atgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgtcaacagataaacgtattgatatagatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||    
T  29100070 atgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgttaacagataaacg------tatagatata 29099977  T
Q  116 gatcttggttgagtttcctnnnnnnnnnntctttgttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgt 215  Q
    |||||| ||| ||||||||             || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  29099976 gatctttgttaagtttcctaaaaaaaaaa-aattattaagtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgt 29099878  T
Q  216 cacaaatgtgtgtgagcgtaaaagagtgtatgtcatcta 254  Q
    ||||||||||||||  ||| |||||||||||| ||||||    
T  29099877 cacaaatgtgtgtggacgt-aaagagtgtatgccatcta 29099840  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 19258742 - 19258833
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||  |||||||    
T  19258742 taatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatg 19258833  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 2509147 - 2509051
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | |||||||  |||||||||    
T  2509147 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtca 2509051  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 34307206 - 34307299
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| |||||||||||||||||   ||||||| |||||||    
T  34307206 agtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatg 34307299  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 28647474 - 28647392
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaa 238  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||||||||||| || |||||||| |||||| | ||||||    
T  28647474 taatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaa 28647392  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 46901803 - 46901899
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||||| |||||||||| |||||  | ||||||  ||||||||||    
T  46901803 agtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtca 46901899  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 39249931 - 39250024
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||| | |||| || || |||| ||||||| |||||||||||||||||| |||||||||||||| || | ||||||| |||||||    
T  39249931 agtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatg 39250024  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 10147049 - 10146996
Alignment:
Q  194 tttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||| ||||||||||||||||||||| |||||||| | || |||| |||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatg 10146996  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 8848923 - 8848987
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaa 220  Q
    |||||||||||||||   ||||||| |   ||||||| |||||||||||||| ||||||||||||    
T  8848923 taatttcacatcacactctcaccccctcccatctcttatttcaatgtttttgtcacatgtcacaa 8848987  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 9642933 - 9643009
Alignment:
Q  154 agtaatttcacatcacatcatca-ccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||| ||||||| |||||| | ||||||| ||||| |||||||| ||  |||||||| | ||||||    
T  9642933 agtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtg 9643009  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 23980254 - 23980161
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  23980254 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 23980161  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 5811231 - 5811306
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  5811231 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtg 5811306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 13108270 - 13108178
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||||||| |||||||||| | |||||| |||||| ||||||||||||||||||||||||||||| | ||||||| |||||||    
T  13108270 agtaatttcacatcacatcctcacccctttca-tctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 13108178  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 42221031 - 42221124
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| | |||||| ||||||||    
T  42221031 agtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatg 42221124  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 20086696 - 20086781
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||| |||| | |||||||    
T  20086696 agtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaag 20086781  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 28307563 - 28307656
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||| |||||||||||| | ||||||| |||||||    
T  28307563 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatg 28307656  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 31148413 - 31148320
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||  ||||||||||||||||| | ||||||| |||||||    
T  31148413 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 31148320  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 7699951 - 7700051
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7699951 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700050  T
Q  254 a 254  Q
    |    
T  7700051 a 7700051  T

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Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 7700149 - 7700249
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700149 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700248  T
Q  254 a 254  Q
    |    
T  7700249 a 7700249  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 7700347 - 7700447
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700347 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700446  T
Q  254 a 254  Q
    |    
T  7700447 a 7700447  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 7700545 - 7700645
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700545 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700644  T
Q  254 a 254  Q
    |    
T  7700645 a 7700645  T

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Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 46475147 - 46475075
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgt 226  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||  |||||||||||||||||    
T  46475147 agtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T

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Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 26972271 - 26972364
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||  |||||||||||||||||| ||||| ||||||||||| | ||||||| |||||||    
T  26972271 agtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatg 26972364  T

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Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 21807390 - 21807490
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||| ||||||||| || |||| ||||||| ||||||| |||||||||||| |||||||| |||||| | ||||||  ||||||| |||||    
T  21807390 agtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatct 21807489  T
Q  254 a 254  Q
    |    
T  21807490 a 21807490  T

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Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 30887826 - 30887730
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||| |||||| |||||||||| |||| |||||||  |||||||||||||| || |||||||||||| |||| | ||||||| |||||||    
T  30887826 ttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatg 30887730  T

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Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 34108549 - 34108453
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||||||||| |||| |||||||  ||||||||||||| || ||||||||||| |||||| | ||||||| ||||||||||    
T  34108549 agtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtca 34108453  T

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Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 45782728 - 45782812
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaa 238  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||| | ||||||    
T  45782728 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 45782812  T

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Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 34828188 - 34828113
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| ||||||| | ||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  34828188 agtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 34828113  T

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Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 36346633 - 36346725
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||  |||| ||||||| |||||||||||||||||| |||||||||||||| || | ||||||| |||||||    
T  36346633 agtaattttacatcatatcatcacct-ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatg 36346725  T

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Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 15020402 - 15020330
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtg 227  Q
    ||||||||||||||| ||| ||||||||||   |||||| ||||||||||||||||| ||||||||||||||||    
T  15020402 agtaatttcacatcatatcttcacccctttcg-tctcttctttcaatgtttttgccatatgtcacaaatgtgtg 15020330  T

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Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 38321132 - 38321057
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||| |||||||||||| ||||||| | | | || |||| ||||||||||||||||||||||||||| ||| ||||    
T  38321132 agtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtg 38321057  T

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Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 42950113 - 42950156
Alignment:
Q  186 atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  42950113 atctcttttttcaatgtatttgccacatatcacaaatgtgtgtg 42950156  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 14023057 - 14022964
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  14023057 agtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 14022964  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 24208567 - 24208475
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtat 246  Q
    ||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  24208567 agtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtat 24208475  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 3986973 - 3987066
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| || |||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  3986973 agtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 3987066  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 3118115 - 3118208
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| ||||||  ||| ||||| |||| |||| || |||||||||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  3118115 agtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatg 3118208  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 13697691 - 13697592
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| |||||||||| |||| ||||||| ||||||||||||| |||| | |||||||||||| || | ||||||| ||| |||||||||    
T  13697691 agtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccacgtatcacaaatgtgtatg-gtgtaaaagggtgcatgtcatct 13697593  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 15345727 - 15345797
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgt 224  Q
    |||||||| | |||| |||||||||  |||| |||| || |||||||||||||||||| ||||||||||||    
T  15345727 agtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaatgt 15345797  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 46192478 - 46192389
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  46192478 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 46192389  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 45829329 - 45829421
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||    
T  45829329 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtca 45829421  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 44275829 - 44275745
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaa 238  Q
    |||||||| |||||| |||||||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||||| ||||||    
T  44275829 agtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaa 44275745  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 3672397 - 3672304
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||  |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||   ||||||| |||||||    
T  3672397 agtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatg 3672304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 28093164 - 28093257
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||| ||| |||||| |||||||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  28093164 agtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 28093257  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 49243938 - 49243845
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| ||||||||   |||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||| |||||||    
T  49243938 agtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatg 49243845  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 6112753 - 6112653
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||| || |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||  ||||||| |||||    
T  6112753 agtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatct 6112654  T
Q  254 a 254  Q
    |    
T  6112653 a 6112653  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 51038887 - 51038811
Alignment:
Q  154 agtaatttcacatcacatcatcacccc-ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||| |||||||||||| ||||||||    
T  51038887 agtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtg 51038811  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 7217888 - 7217814
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgt 228  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||||    
T  7217888 agtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgt 7217814  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 21391023 - 21391123
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||  |||| | |||| ||||||| ||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  21391023 agtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 21391122  T
Q  254 a 254  Q
    |    
T  21391123 a 21391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 35545035 - 35544960
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||||| | |||||||||| ||||    
T  35545035 agtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtg 35544960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 54849909 - 54849836
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||||||| ||  | | ||||||| ||||||| |||||| ||| |||||||| || |||||    
T  54849909 taatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtg 54849836  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 17225440 - 17225352
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagt 242  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  17225440 agtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaagagt 17225352  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 9408107 - 9408203
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||    
T  9408107 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtca 9408203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 40888010 - 40888103
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  40888010 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatg 40888103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 1815684 - 1815780
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||   ||||||| ||||||||||    
T  1815684 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtca 1815780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 2237399 - 2237303
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||| ||||||||||    
T  2237399 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtca 2237303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 39371050 - 39370950
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  39371050 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 39370951  T
Q  254 a 254  Q
    |    
T  39370950 a 39370950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 14831665 - 14831574
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| | ||||||||||||||| | ||||||| |||||||    
T  14831665 taattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatg 14831574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 41003918 - 41004010
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||||||||||| ||||||| || ||||||| |||| |||||||||||||||| |||||||| |||| ||||||| |||||||    
T  41003918 agtaattttacatcacatcatcatccctttttatatcttttt-caatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatg 41004010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 4300613 - 4300696
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    |||||||||||||||||| ||||  |||| ||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||    
T  4300613 taatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaag 4300696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 13347251 - 13347158
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||  |||||| |||||||| | |||| |||| || |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  13347251 agtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 13347158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 31800681 - 31800596
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    |||||||| |||||| ||||||||||||||| |||| || ||||||| |||||||||| ||||| ||||||||||| | |||||||    
T  31800681 agtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaag 31800596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 33404531 - 33404597
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatg 33404597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 27553441 - 27553525
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaa 238  Q
    |||||||| |||||| || ||||||  ||||  |||||| |||||||||||||||||| ||||||||||||||||| | ||||||    
T  27553441 agtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaa 27553525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 19596169 - 19596206
Alignment:
Q  188 ctcttttttcaatgtttttgccacatgtcacaaatgtg 225  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  19596169 ctcttctttcaatgtttttgccacatgtcacaaatgtg 19596206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 12164339 - 12164297
Alignment:
Q  189 tcttttttcaatgtttttgccacatgtcacaaatgtgtgtgag 231  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgag 12164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 247
Target Start/End: Complemental strand, 36315680 - 36315591
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  36315680 atttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 36315591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 37914308 - 37914397
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||| |||||||    
T  37914308 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatg 37914397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 44958236 - 44958143
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  44958236 agtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 44958143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 33732692 - 33732599
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  33732692 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 33732599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 24137160 - 24137235
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  24137160 agtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtg 24137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 37498931 - 37499018
Alignment:
Q  154 agtaatttcacatcacatcatcacccc--ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    |||||||| |||||| ||||||||||   |||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  37498931 agtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaag 37499018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 3830965 - 3831038
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtg 227  Q
    |||||||| |||||| || |||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  3830965 agtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtg 3831038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 6376306 - 6376394
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||||||| |||||| |||| ||||||| ||||||||     ||||||||||||||||||||||| | ||||||| |||||||    
T  6376306 agtaatttcacatcacatcctcacccattttcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 6376394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 16089944 - 16089852
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||| ||||  ||||| |||||| |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  16089944 agtaattttacatcatatcaccacctttttta-tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 16089852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 41188892 - 41188824
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaat 222  Q
    |||||||| |||||||||||||| ||||||| || || |||||||||||||||||||||||||| ||||    
T  41188892 agtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtcataaat 41188824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 14573118 - 14573043
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| |||||||||| |||  ||||||| ||||||||||||||| || |||||||||||||||||    
T  14573118 agtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtg 14573043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 6844 - 6748
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  6844 ttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 6748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 30432462 - 30432362
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |  |||||| ||||||| |||||    
T  30432462 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatct 30432363  T
Q  254 a 254  Q
    |    
T  30432362 a 30432362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 12665468 - 12665374
Alignment:
Q  154 agtaatttcacatcacatcatcacccctttta-atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| ||||  ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  12665468 agtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatg 12665374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 31318928 - 31318853
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  31318928 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 31318853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 33726135 - 33726041
Alignment:
Q  154 agtaatttcacatcacatcatcaccc-cttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||||||| ||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |||| | ||||||  |||||||    
T  33726135 agtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatg 33726041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 42162721 - 42162628
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| |||||||||||||| || | ||||||| |||||||    
T  42162721 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatg 42162628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 44081903 - 44081810
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||| | |||||||||| |||| ||||||| ||||||||||||| |||| ||| ||||||||||||| | ||||||| |||||||    
T  44081903 agtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatg 44081810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 36189337 - 36189246
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||| | |||| |||||||| |||||| ||||||| ||||||| |||||||||| |||||||||||| |||| | ||||||| |||||||    
T  36189337 taattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatg 36189246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 18184676 - 18184580
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| | |||| ||||||||||||||| |||||||  |||||||||||  |||| |||||||||| ||||||   ||||||| ||||||||||    
T  18184676 agtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtca 18184580  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 38845091 - 38845165
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||| |||||||||||||||||| || |||| || ||||||| ||||| ||||||||||||| ||||||||    
T  38845091 agtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 43186150 - 43186077
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtg 227  Q
    |||||||| | |||| |||||||||  |||| |||| || |||||||||||||||||||| |||||||||||||    
T  43186150 agtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaatgtgtg 43186077  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 10203787 - 10203691
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| | |||| |||| ||||| |||| ||||||| ||||||| |||||| ||| |||||||||||||||||   |||||||  |||||||||    
T  10203787 agtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtca 10203691  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 31547 - 31608
Alignment:
Q  186 atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||| | || |||| |||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatg 31608  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 42668850 - 42668942
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||||||||||||| | ||||||| || | | | |||| ||| |||||||||||||| |||||||| |||||||| | || |||| |||||||    
T  42668850 agtaatttcacatcataccatcacctctctca-tatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatg 42668942  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 39467169 - 39467269
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||||| |||||||| ||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||||| | ||||||| |||||||||||||    
T  39467169 agtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatct 39467268  T
Q  254 a 254  Q
    |    
T  39467269 a 39467269  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 36749529 - 36749429
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||  ||||||| |||||    
T  36749529 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatct 36749430  T
Q  254 a 254  Q
    |    
T  36749429 a 36749429  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 46112012 - 46112108
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||  ||||||||||    
T  46112012 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtca 46112108  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 39072350 - 39072441
Alignment:
Q  163 acatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatcta 254  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||| |||| | ||||||| ||||||||||||||    
T  39072350 acatcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatcta 39072441  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 34749966 - 34750059
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||| |||||||    
T  34749966 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatg 34750059  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 36370406 - 36370499
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||||||  |||||||    
T  36370406 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 36370499  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 44000112 - 44000019
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||  |||||||    
T  44000112 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 44000019  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 21559684 - 21559591
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| |||||| ||||| |||| |||| ||||||| ||||||| |||||||||| ||||||||||||||||| | ||||||| |||||||    
T  21559684 agtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 21559591  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 22894803 - 22894710
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||  |||||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  22894803 agtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 22894710  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 51339851 - 51339924
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtg 227  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||    
T  51339851 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtg 51339924  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 254
Target Start/End: Original strand, 30735564 - 30735663
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| ||||| | |||| |||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||| |||||    
T  30735564 agtaatttaacatcatatcatcacccttttta-tatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatct 30735662  T

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Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 29460756 - 29460690
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatg 29460690  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 29471608 - 29471542
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatg 29471542  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 38231381 - 38231323
Alignment:
Q  189 tcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  38231381 tcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 38231323  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 20856221 - 20856312
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    |||||||| | |||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||||| || | ||||||| |||||||    
T  20856221 agtaattttatatcacatcatcatccttttta-tatctttt-tcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatg 20856312  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 53638255 - 53638165
Alignment:
Q  157 aatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||| |||||||||||||||||| | | ||||||| |||| |||||||| ||||||||||| | |||||||| | || |||| |||||||    
T  53638255 aattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatg 53638165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 87259 - 87307
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  87259 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 87307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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