View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_low_3 (Length: 381)
Name: NF19244_low_3
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 3625458 - 3625090
Alignment:
| Q |
13 |
tcatcatgtcctaattggtcaaaactcaaaaccaataatgctactgagtcttgaaggatggttcaaaagatattacatgcaaatttagaccaaatacaat |
112 |
Q |
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| T |
3625458 |
tcatcatgtcctaattggtcaaaactcaaaaccaataatgctactgagtcttgaaggatggttcaaaagatagtacatgtaaatttaggccaaatacaat |
3625359 |
T |
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| Q |
113 |
gtttttcgaatcatcgtgacaacctgattttattgaagctctaaaacctagttttattttgttaaattcattgcaatttcatacatgcactaaatcatat |
212 |
Q |
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| T |
3625358 |
gtttttggaatcatggtgacaacctgattttatagaagctctaaaacctagttttattttgttaaattcattgcaatttcatacatgcactaaatcatat |
3625259 |
T |
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| Q |
213 |
tttaaagagtgatgctaataacaca-nnnnnnnattattaaaatttatataaaccacactaaatttatatgggatcacatgatttggtgggactcgtgcg |
311 |
Q |
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| T |
3625258 |
tttaaagagtgatgccaataacacattttttttattattaaaatttatataaaccacactaaatttatatgggatcacatgatttggtgggactcatgtg |
3625159 |
T |
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| Q |
312 |
aatttttattaatcaatgaaagtgcattagaaagtgtgggttgctgacattattctttaatcatatttt |
380 |
Q |
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| T |
3625158 |
aattttaattaatcaaagagagtgcattagaaagtgtgggctgctgacattattctttaatcatatttt |
3625090 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 11532488 - 11532575
Alignment:
| Q |
268 |
cactaaatttatatgggat-cacatgatttggtgggactcgtgcgaatttttattaatcaatgaaagtgcattagaaagtgtgggttg |
354 |
Q |
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| T |
11532488 |
cactaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgttg |
11532575 |
T |
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