View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_low_4 (Length: 364)
Name: NF19244_low_4
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 29023622 - 29023963
Alignment:
| Q |
13 |
aaccatatagttactgaataataaataatattgaacattcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacct |
112 |
Q |
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| T |
29023622 |
aaccatatagttactgaataataaataatattgaacattcaattaaacataacattaatggattcgatctttgtcaccaccaacaatagaaccatgacct |
29023721 |
T |
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| Q |
113 |
atactagatgtctgatcagggattgattctggctctatgcttttggtcctttgaagactaggactacgatgaagcctacaacgaaatgaaccaggatgtg |
212 |
Q |
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| T |
29023722 |
atagtagatgtctgatcagggattgattctggctctatgcttttggtcctttgaagactaggactacgatgaagcctacaacgaaatgaaccaggatgtg |
29023821 |
T |
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| Q |
213 |
ttgttggtgaacatagacaatttgttttagtcatactaggttgtctcataagtccaccttgtcccatatttgaacctccttgtacctctacccctatagt |
312 |
Q |
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| T |
29023822 |
ttgttggtgaacatagacaatttgttttggtcatactaggttgtctcataagtccaccttgtcccatatttgaacccccttgtacctctacccctatagt |
29023921 |
T |
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| Q |
313 |
acttgacataacttcacttcttgattgaatctccactttcat |
354 |
Q |
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| T |
29023922 |
acttgacataacttcactccttgattgaatctccactttcat |
29023963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 274
Target Start/End: Original strand, 14133921 - 14134028
Alignment:
| Q |
167 |
agactaggactacgatgaagcctacaacgaaatgaaccaggatgtgttgttggtgaacatagacaatttgttttagtcatactaggttgtctcataagtc |
266 |
Q |
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|||||||| ||||||| |||||||| | |||||| |||| |||||||||||| || |||| |||||| | || ||||||| | |||||||| ||| | |
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| T |
14133921 |
agactaggtgtacgatgtagcctacacctaaatgatccagcatgtgttgttggagagcataaacaattgttcttgttcatacttgcttgtctcaaaagac |
14134020 |
T |
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| Q |
267 |
caccttgt |
274 |
Q |
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| T |
14134021 |
caccttgt |
14134028 |
T |
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