View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19244_low_6 (Length: 326)

Name: NF19244_low_6
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19244_low_6
NF19244_low_6
[»] chr8 (1 HSPs)
chr8 (13-326)||(8893288-8893600)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 8893288 - 8893600
Alignment:
Q  13 aaaatacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaatnnnnnnnnnnnnnnnnnnnnnct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||    
T  8893288 aaaatacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaa---gaaaaaaaaagaaaaaaaact 8893384  T
Q  113 aacaca--ttaatatactttattacacgcaaatgaagctataatttaaactgctttttgttctccacaagttttcttaaaaacccgattccatttggaaa 210  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8893385 aacacacattaatatactttattacacgcaaatgaagctataatttaaactgctttttgttccccacaagttttcttaaaaacccgattccatttggaaa 8893484  T
Q  211 tattgttctgcatggaaaaacacggttttgtctaactcactcattcgaggtggaaagaccatgtttttccttatatatttaaaacggtacttccaaacgg 310  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8893485 tattgttctgcacggaaaaacacagttttgtctaactcactcattcgaggtggaaagaccatgtttttccctatatatttaaaacggtacttccaaacgg 8893584  T
Q  311 gtcggttttttaagaa 326  Q
    ||||||||||||||||    
T  8893585 gtcggttttttaagaa 8893600  T

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