View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_low_7 (Length: 320)
Name: NF19244_low_7
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 302
Target Start/End: Original strand, 37816005 - 37816279
Alignment:
| Q |
28 |
cttatctaagtctatctcacaatgaatcacttgatgaaattgagtcaaagagttttcaattttgcctttctaatgaatgggaatatgagataatgaatgt |
127 |
Q |
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| T |
37816005 |
cttatctaagtctatatcacaatgaatcacttgatgaaattgagtcaaagagttttcaattttgcctttctaatgaatgggaattatcgataatgaatgt |
37816104 |
T |
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| Q |
128 |
gtaaatgaatcggtgtggcataaagaagagactatacgaggaagttaaatgcattnnnnnnntgaaattttataggcatgattagaatcccaagtaacat |
227 |
Q |
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| T |
37816105 |
gtaaatgaatcggtgtggcataaagaagagactatacgaggaagttaaatgcattaaaaaaatgaaattttgtaggcatcattagaatcccaagtaacat |
37816204 |
T |
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| Q |
228 |
gattcaaatcaatattataaccaagttaatttgaattatccttcaaagtaatttgaatttccctttggcaagata |
302 |
Q |
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| T |
37816205 |
gattcaaatcaacattataacaaagttaatttgaattacccttcaaagtaatttgaatttccctttagcaagata |
37816279 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 25811654 - 25811702
Alignment:
| Q |
225 |
catgattcaaatcaatattataaccaagttaatttgaattatccttcaa |
273 |
Q |
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||||| ||||||||||||| | |||||||| |||||||||| ||||||| |
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| T |
25811654 |
catgactcaaatcaatattttcaccaagttgatttgaattacccttcaa |
25811702 |
T |
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