View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19244_low_8 (Length: 292)

Name: NF19244_low_8
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19244_low_8
NF19244_low_8
[»] chr2 (1 HSPs)
chr2 (1-292)||(4759924-4760215)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4759924 - 4760215
Alignment:
Q  1 cttccaccacctcctcctcctccttatgcttctctataacttgcactgtttcaatattttcaaccatgttctgttcaatgttgctctgttcagctctgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4759924 cttccaccacctcctcctcctccttatgcttctctataacttgcactgtttcaatattttcaaccatgttctgttcaatgttgctctgttcagctctgct 4760023  T
Q  101 tttttctttgtttaaataatcggaggattcacagcgctttcgggttgctttggattgaagaaaccgtttgatacgagtaaagaattgaagctttatgtca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4760024 tttttctttgtttaaataatcggaggattcacagcgctttcgggttgctttggattgaagaaaccgtttgatacgagtaaagaattgaagctttatgtta 4760123  T
Q  201 gagagtacccaaatagaagaagacgatgaagtatttgacatgttggttttgtgaagtgtctgttgtttttggtttttcttttataaatttgt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4760124 gagagtacccaaatagaagaagacgatgaagtatttgacatgttggttttgtgaagtgtttgttgtttttggtttttcttttataaatttgt 4760215  T

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