View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19244_low_9 (Length: 263)
Name: NF19244_low_9
Description: NF19244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19244_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 5173159 - 5173377
Alignment:
| Q |
17 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5173159 |
ttggctcactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------ |
5173252 |
T |
|
| Q |
117 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgac |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173253 |
attccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgac |
5173352 |
T |
|
| Q |
217 |
ctctctcataataatttctcaggtg |
241 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
5173353 |
ctctctcataataatttctcaggtg |
5173377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 4842376 - 4842145
Alignment:
| Q |
10 |
aacaatattggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4842376 |
aacaatattggctcactcccaagttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagata |
4842277 |
T |
|
| Q |
110 |
ttggtatattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagta |
209 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
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| T |
4842276 |
ttggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaacttaagta |
4842177 |
T |
|
| Q |
210 |
ctttgacctctctcataataatttctcaggtg |
241 |
Q |
| |
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||| ||||||||||| ||| |||||||||||| |
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|
| T |
4842176 |
cttggacctctctcagaatcatttctcaggtg |
4842145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 5182488 - 5182712
Alignment:
| Q |
17 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
116 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
5182488 |
ttggttcattcccaagttggttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtat |
5182587 |
T |
|
| Q |
117 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgac |
216 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
5182588 |
attccttcctagtgttaagtatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggac |
5182687 |
T |
|
| Q |
217 |
ctctctcataataatttctcaggtg |
241 |
Q |
| |
|
|||||||| ||| |||||||||||| |
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|
| T |
5182688 |
ctctctcagaatcatttctcaggtg |
5182712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 5195886 - 5196112
Alignment:
| Q |
18 |
tggctcactcccaagt---tggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggt |
114 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |
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|
| T |
5195886 |
tggctcactcccaagtaattggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatatcggt |
5195985 |
T |
|
| Q |
115 |
atattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttg |
214 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||| | |
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|
| T |
5195986 |
atattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttcaactcttgg |
5196085 |
T |
|
| Q |
215 |
acctctctcataataatttctcaggtg |
241 |
Q |
| |
|
|| ||||||| ||| |||||||||||| |
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|
| T |
5196086 |
acttctctcaaaatcatttctcaggtg |
5196112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 7142422 - 7142606
Alignment:
| Q |
17 |
ttggctcactcccaag---ttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattgg |
113 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
7142422 |
ttggctcactcccaagaaattggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccagaagatattgg |
7142521 |
T |
|
| Q |
114 |
tatattccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaa |
198 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||| |
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|
| T |
7142522 |
tatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 5214087 - 5214269
Alignment:
| Q |
59 |
aatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtatattccttcctagtattacctatttgaacttttcaatgaatag |
158 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| |||||| |||| |
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|
| T |
5214087 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
5214186 |
T |
|
| Q |
159 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgacctctctcataataatttctcaggtg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||| |
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|
| T |
5214187 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtg |
5214269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 4856843 - 4856686
Alignment:
| Q |
17 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
116 |
Q |
| |
|
|||| ||| ||||||||| ||||||| ||||| || ||| | ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
4856843 |
ttggttcattcccaagttcgttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtat |
4856744 |
T |
|
| Q |
117 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatata |
174 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4856743 |
attccttcctagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 5160243 - 5160467
Alignment:
| Q |
17 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggatctatcaaacaacaattttagtggtttgcttccggaagatattggtat |
116 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||| ||||| | ||||| ||| | | |
|
|
| T |
5160243 |
ttggctcatccccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgattt |
5160342 |
T |
|
| Q |
117 |
attccttcctagtattacctatttgaacttttcaatgaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgagtactttgac |
216 |
Q |
| |
|
||||||||| ||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||| |
|
|
| T |
5160343 |
attccttccaagtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggac |
5160442 |
T |
|
| Q |
217 |
ctctctcataataatttctcaggtg |
241 |
Q |
| |
|
|||||||||||| ||||||| |||| |
|
|
| T |
5160443 |
ctctctcataatcatttctcgggtg |
5160467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 5203293 - 5203345
Alignment:
| Q |
17 |
ttggctcactcccaagttggttgataaataatgatggcatacaatatttggat |
69 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5203293 |
ttggctcattcccaagttggttgatacataatgatgatatacaatatttggat |
5203345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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