View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19245_high_3 (Length: 244)
Name: NF19245_high_3
Description: NF19245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19245_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 20068362 - 20068134
Alignment:
| Q |
16 |
aaaccaaaaggaacaagagcagaaccaagcaaaattgaatccaaagaacaaaaaccccaacccaatttcccagtcccaatctcaaacaaaccacgaatca |
115 |
Q |
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| T |
20068362 |
aaaccaaaaggaacaagagcagaaccaagcaaaattgaatccaaagaacaaaaaccccaacccaatttcccagtcccaatctcaaacaaaccacgaatca |
20068263 |
T |
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| Q |
116 |
taccaacctcatcctccttatcatcactattaacaccaatccaactacaatgaacacccttagacctaaacctacgactgacattcccaaaaaaccctaa |
215 |
Q |
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| T |
20068262 |
taccaacctcatcctccttatcatcactattaacaccaatccaactacaatgaacacccttagacctaaacctacgactgacattcccaaaaaaccctaa |
20068163 |
T |
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| Q |
216 |
aaacctatcacagaaagaattctcaattc |
244 |
Q |
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| T |
20068162 |
aaacctatcacagaaagaattctcaattc |
20068134 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 50751092 - 50751140
Alignment:
| Q |
82 |
ttcccagtcccaatctcaaacaaaccacgaatcataccaacctcatcct |
130 |
Q |
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| T |
50751092 |
ttcctagtcccaatctcaaacaacccacgtatcataccaacctcatcct |
50751140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 4323425 - 4323377
Alignment:
| Q |
82 |
ttcccagtcccaatctcaaacaaaccacgaatcataccaacctcatcct |
130 |
Q |
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| T |
4323425 |
ttcctagtcccaatctcaaacaacccacgtatcataccaacctcatcct |
4323377 |
T |
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