View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19245_low_2 (Length: 356)
Name: NF19245_low_2
Description: NF19245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19245_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 76 - 342
Target Start/End: Complemental strand, 33903841 - 33903575
Alignment:
| Q |
76 |
acaaaatgaataagtaggagggtgtgacctaatatggacaggcgtggactatgggatcatagtatgacagacaagtgtggcacattgattattattcact |
175 |
Q |
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| T |
33903841 |
acaaaatgaataagtaggagggtgtgacctaatatggacaggcgtggactatgggatcatagcatgacagacaagtgtggcacattgattattatttact |
33903742 |
T |
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| Q |
176 |
gtcattgctaaatcatgctttaagaacttcttatatttctctatcttcaatgtcaacaccaacaaaagactaagcattgaagaataccatagataagaat |
275 |
Q |
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| T |
33903741 |
gtcattgctaaatcatgctttaagaagttcttatatttctctatcctcaatgtcaacaccaacaaaagactaagcattgaagaataccatagataagaat |
33903642 |
T |
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| Q |
276 |
aatcacatattcatggtagtctgtttactttttaaaagtattcttcatgagctataggttattattg |
342 |
Q |
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| T |
33903641 |
aatcacatattcatggtagtctgtttactttttaaaagtattcttcatgagctataggttattattg |
33903575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 33908301 - 33908232
Alignment:
| Q |
7 |
tgagatgaattcccctatccctaaatgcttgccgattttggttaacatgtaatttatttttaggtaaaaac |
77 |
Q |
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| T |
33908301 |
tgagatgaattccc-tatccctaaatgcttgccgattttggttaacatgtaatttatttttaggtaaaaac |
33908232 |
T |
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