View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_high_1 (Length: 459)
Name: NF19246_high_1
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27326155 - 27325956
Alignment:
| Q |
19 |
gatacacaccaagccttggagaatacttagagaatgcatggatttccataagtgcacctgctatacttactcatgcttactttgtgattccacattcatt |
118 |
Q |
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| T |
27326155 |
gatacacaccaagccttggagaatacttagagaatgcatggatttccataagtgcacctgctatacttactcatgcttactttgtgattccacattcatt |
27326056 |
T |
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| Q |
119 |
caaaatggaagacttggtttgtttagaagaaaaatccaacataattaggctttcagcaataattttacgccttgctaatgatctcggaacatataaagta |
218 |
Q |
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| T |
27326055 |
caaaatcgaagacttggtttgtttagaagaaaactccgacataattcggctttcagcaataattttacgccttgctaatgacctcggaacatataaagta |
27325956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 245 - 450
Target Start/End: Complemental strand, 27325911 - 27325707
Alignment:
| Q |
245 |
taaaaatgcaattaaaccttaaaattttcgctaatcgtttttcttttcctttgttaaagcgtgaaaacgagacaggtgatatcccaaaatcaattcaatg |
344 |
Q |
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| T |
27325911 |
taaaaatacaattaaaccttcattttttcactgattatttttattttctttt-ttaaagcgtgaaaacgagacaggtgatattccaaagtcaattcaatg |
27325813 |
T |
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| Q |
345 |
ctacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagtccatgatgtttatagagtggaagaagttgaataaagaagctcatagt |
444 |
Q |
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| T |
27325812 |
ttacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagtccatgatgtttatagagtggaagaagatgaataaagaagctcatggt |
27325713 |
T |
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| Q |
445 |
tcatct |
450 |
Q |
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| T |
27325712 |
tcatct |
27325707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 27443995 - 27443815
Alignment:
| Q |
38 |
agaatacttagagaatgcatggatttccataagtgcacctgctatacttactcatgcttactttgtgattccacattcattcaaaatggaagacttggtt |
137 |
Q |
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||||||| | ||||||||||||| || ||| ||| |||| ||||||||| |||||||||||| |||||||||||||| ||||| ||||||| |||||| |
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| T |
27443995 |
agaatacattgagaatgcatggacatcaataggtgaccctgttatacttacccatgcttactttttgattccacattcactcaaagtggaagatttggtt |
27443896 |
T |
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| Q |
138 |
tgtttagaagaaaaatccaacataattaggctttcagcaataattttacgccttgctaatgatctcggaacatataaagta |
218 |
Q |
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| T |
27443895 |
cgtttagaagaaaaccccgacataataaagcattcatcaatgattttacgccttgctaatgacctgggaacatataaagta |
27443815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 450
Target Start/End: Complemental strand, 27443591 - 27443483
Alignment:
| Q |
342 |
atgctacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagtccatgatgtttatagagtggaagaagttgaataaagaagctcat |
441 |
Q |
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||||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
27443591 |
atgctacatgaacgaaactggagcttctgaagttgaagctcatgagtatgtaaagtccatgatacatgcagagtggaagaagatgaataaagaagctcat |
27443492 |
T |
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| Q |
442 |
agttcatct |
450 |
Q |
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| T |
27443491 |
agttcatct |
27443483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 27406763 - 27406696
Alignment:
| Q |
336 |
aattcaatgctacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagtccatgat |
404 |
Q |
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| T |
27406763 |
aatttaatgctacatgaaggaaactgaagcttctgaagttgaagctcatg-gtatgtaaagtccatgat |
27406696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 298 - 450
Target Start/End: Original strand, 18845414 - 18845566
Alignment:
| Q |
298 |
ttaaagcgtgaaaacgagacaggtgatatcccaaaatcaattcaatgctacatgaacgaaactggagcttctgaagtagaggcttgtgagtatgttaagt |
397 |
Q |
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|||||||| ||||| |||||||||||||| ||||| | || | |||||||||||||||||||||||||||||||| | |||||| | || ||| | |||| |
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| T |
18845414 |
ttaaagcgggaaaatgagacaggtgatattccaaagttaaataaatgctacatgaacgaaactggagcttctgaaattgaggctagggattatatgaagt |
18845513 |
T |
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| Q |
398 |
ccatgatgtttatagagtggaagaagttgaataaagaagctcatagttcatct |
450 |
Q |
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| T |
18845514 |
ccatgatgtctacattatggaagaagatgaataaagaagctcaaagttcatct |
18845566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 18844865 - 18844966
Alignment:
| Q |
63 |
tccataagtgcacctgctatacttactcatgcttactttgtgattccacattcattcaaaatggaagacttggtttgtttagaagaaaaatccaacataa |
162 |
Q |
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|||||| |||||| |||| || |||| |||| ||||||| ||| ||||||||| | |||||||||||||||||| ||||| |||| | |||||||||| |
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| T |
18844865 |
tccataggtgcacatgctgtatttacccatggttacttttcgatgccacattcaataaaaatggaagacttggttcttttaggagaagactccaacataa |
18844964 |
T |
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| Q |
163 |
tt |
164 |
Q |
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|| |
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| T |
18844965 |
tt |
18844966 |
T |
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