View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19246_high_9 (Length: 279)
Name: NF19246_high_9
Description: NF19246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19246_high_9 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 42927546 - 42927797
Alignment:
| Q |
16 |
acagcacagtccatggggcattgaacgccgcgactttgaagtttgactcgtgttggtaagcaattacggcaagcacgccacataaaattcttaactttcg |
115 |
Q |
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| T |
42927546 |
acagcacagtccatggggcattgaacgccgcgactttgaagtttgactcgtgttggtaagcaattacggcaagcacgccacataaaattcttaactttcg |
42927645 |
T |
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| Q |
116 |
gcagcaatttcaggttccatatactgttccagcttccatttacacggtgttagttcaaagcagtgttattattaagaatgtcgcgatatgcactacgaac |
215 |
Q |
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| T |
42927646 |
gcggcaatttcaggttccatatactgttccagcttccatttacacggtgttggttcaaagcagtgttattattaagaatgtcgcaatatgcactacgaat |
42927745 |
T |
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| Q |
216 |
ggaataattcccatctttctcaaatctccaagtcgctatgtcttgttgaact |
267 |
Q |
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| T |
42927746 |
ggaataattcccatctttctcaaatctccaagtcgctatgtcttgttgaact |
42927797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 12226213 - 12226352
Alignment:
| Q |
10 |
gcacagacagcacagtccatggggcattgaacgccgcgactttgaagtttgactcgtgttggtaagcaattacggcaagcacgccacataaaattcttaa |
109 |
Q |
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| T |
12226213 |
gcacagacagcacagttcgtggggcattggacaccgcgactatgaagtttgaccctcgttggtaaacagttacggcaagaacgccacataaaattcttaa |
12226312 |
T |
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| Q |
110 |
ctttcggcagcaatttcaggttccatatactgttccagct |
149 |
Q |
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| T |
12226313 |
ctttcggtggcaatttcagattccaaatactattccagct |
12226352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 30465904 - 30465852
Alignment:
| Q |
73 |
aagcaattacggcaagcacgccacataaaattcttaactttcggcagcaattt |
125 |
Q |
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| T |
30465904 |
aagcaattacggcaagctcgccaaaggaaattcttaactttcgggggcaattt |
30465852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 186361 - 186288
Alignment:
| Q |
73 |
aagcaattacggcaagcacgccacataaaattcttaactttcggcagcaatttcaggttccatatactgttcca |
146 |
Q |
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| T |
186361 |
aagcaattacggcaagctcgccaaaggaaattcttaactttcgggggcaattttaagctccagatacagttcca |
186288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 32577273 - 32577221
Alignment:
| Q |
73 |
aagcaattacggcaagcacgccacataaaattcttaactttcggcagcaattt |
125 |
Q |
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| T |
32577273 |
aagcaattacggcaagctcgccaaaggaaattcttaactttcgggggcaattt |
32577221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 30797701 - 30797753
Alignment:
| Q |
73 |
aagcaattacggcaagcacgccacataaaattcttaactttcggcagcaattt |
125 |
Q |
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| T |
30797701 |
aagcaattacggcaagctcgccaaaggaaattcttaactttcgggggcaattt |
30797753 |
T |
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